Release v.1

docs/README

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+Visit:
+
+https://github.com/nikosT/Gisola/wiki
+
+and/or
+
+Download Wiki:
+
+git clone https://github.com/nikosT/Gisola.wiki.git

src/config.py

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+#!/usr/bin/env python3
+# -*- coding: utf-8 -*-
+
+#    Copyright (C) 2021 Triantafyllis Nikolaos
+
+#    This file is part of Gisola.
+
+#    Gisola is free software: you can redistribute it and/or modify
+#    it under the terms of the GNU General Public License as published by
+#    the Free Software Foundation, either version 3 of the License, 
+#    or any later version.
+
+#    Gisola is distributed in the hope that it will be useful,
+#    but WITHOUT ANY WARRANTY; without even the implied warranty of
+#    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+#    GNU General Public License for more details.
+
+#    You should have received a copy of the GNU General Public License
+#    along with Gisola.  If not, see <https://www.gnu.org/licenses/>.
+
+import yaml, logging, sys, os, time as tm
+from obspy import UTCDateTime, Stream, Trace, Inventory
+#from obspy.geodetics.base import inside_geobounds
+from turfpy.measurement import boolean_point_in_polygon
+from geojson import Point, Polygon, Feature
+
+# local lib
+import event
+
+def setup_logger(name, log_file, level=logging.INFO):
+    """To setup as many loggers as you want"""
+
+    handler = logging.FileHandler(log_file)
+    console = logging.StreamHandler() 
+
+    form=logging.Formatter('%(asctime)s %(levelname)s %(message)s')
+    form.converter = tm.gmtime
+
+    handler.setFormatter(form)
+    console.setFormatter(form)
+
+    logger = logging.getLogger(name)
+    logger.setLevel(level)
+    console.setLevel(level)
+
+    logger.addHandler(handler)
+    logger.addHandler(console)
+
+    logger.propagate = False
+
+    return logger
+
+
+
+def read(filepath):
+    with open(filepath, 'r') as _f:
+        return yaml.load(_f, Loader=yaml.FullLoader)
+
+def rules(magnitude, domain):
+    return [elem[2] for elem in list(filter(lambda x: True \
+    if round(x[0],1)<=round(magnitude,1) and round(magnitude,1)<=round(x[1],1) \
+    else False, domain))]
+
+def init(evnt, _cfg):
+    """
+    Initialize process based on event's info and configuration
+    """
+    # check crustal model geobox
+    def check(rule):
+        if rule['Geobox'] and boolean_point_in_polygon(Feature(\
+           geometry=Point((org.longitude, org.latitude))), \
+           Polygon([[eval('('+x.replace(')','').replace('(','')+')') for x in rule['Geobox'].replace(', ', ',').split('),(')]])):
+            return True
+
+    # global variables for the entire program
+    global cfg, evt, org, inv, distRules, shiftRules, windowRules, freqRules, st, \
+    gridRules, crustalRules, workdir, sourcedir, crustaldir, grdatdir, greendir,\
+    vel_types, acc_types, inpinvdir, inversiondir, allstatdir, rawdir, blackList, \
+    whiteList, magPriority, azmGap, outputdir, bestinvdir, besttl, solutions, \
+    correlations, logger, locations, revise
+
+    # make configuration global variable
+    cfg=_cfg
+
+    # make event global variable
+    evt=evnt
+    org=event.getOrigin(cfg,evnt,cfg['Watcher']['Historical'])
+    mag=event.getMagnitude(evnt, org)
+
+    # broadband
+    vel_types=['M/S', 'M/SEC', 'NM/S', 'NM/SEC', 'CM/S', 'CM/SEC', 'MM/S', 'MM/SEC']
+
+    # strong motion
+    acc_types=['M/S**2', 'M/(S**2)', 'M/SEC**2', 'M/(SEC**2)', 'M/S/S', \
+    'NM/S**2', 'NM/(S**2)', 'NM/SEC**2', 'NM/(SEC**2)', 'CM/S**2', \
+    'CM/(S**2)', 'CM/SEC**2', 'CM/(SEC**2)', 'MM/S**2', 'MM/(S**2)', \
+    'MM/SEC**2', 'MM/(SEC**2)']
+
+    st=Stream() # init
+
+    # read configuration file
+    #cfg=read(filepath)
+
+    # define workdir
+    #workdir=os.path.join(cfg['WorkDir'],str(org.time)[:4],str(org.time).split('.')[0]+'_'+\
+    #        os.path.basename(str(evt.resource_id)),str(UTCDateTime.now()))
+    workdir=os.path.join(cfg['WorkDir'],str(org.time)[:4],os.path.basename(str(evt.resource_id)),str(UTCDateTime.now()))
+
+    sourcedir=os.path.join(workdir, 'sources')
+    crustaldir=os.path.join(workdir, 'crustals')
+    grdatdir=os.path.join(workdir,'grdat')
+    greendir=os.path.join(workdir,'greens')
+    inpinvdir=os.path.join(workdir,'inpinv')
+    allstatdir=os.path.join(workdir,'allstat')
+    rawdir=os.path.join(workdir,'raw')
+    inversiondir=os.path.join(workdir,'inversions')
+    outputdir=os.path.join(workdir,'output')
+
+    os.makedirs(workdir)
+    os.makedirs(outputdir)
+
+    revise=False
+
+    logger = setup_logger(str(UTCDateTime.now()), os.path.join(outputdir, 'log'))
+
+    #logging.basicConfig(level=getattr(logging, 'INFO'), \
+    #format='%(asctime)s - %(message)s\n', handlers=[
+    #    logging.FileHandler(filename=os.path.join(workdir, 'log')),
+    #    logging.StreamHandler()
+    #])
+
+    distRules=rules(mag.mag, cfg['Inventory']['Distance'])
+    shiftRules=rules(mag.mag, cfg['Inversion']['TimeShift'])
+    windowRules=rules(mag.mag, cfg['Inversion']['Window'])
+    freqRules=rules(mag.mag, cfg['Inversion']['Frequency'])
+
+    # filter grid rules based on magnitude
+    gridRules=list(filter(lambda x: True if round(x['Rule'][0],1)<=round(mag.mag,1) and \
+    round(mag.mag,1)<=round(x['Rule'][1],1) else False, cfg['Green']['Grid']))
+
+    crustalRules=list(filter(check, cfg['Green']['Crustal']))
+
+    if not crustalRules:
+        crustalRules=[rule for rule in cfg['Green']['Crustal'] if not rule['Geobox']]
+
+    # read station file for whitelist and blacklist
+    if cfg['Inventory']['WhiteList']['Filepath']:
+        with open(cfg['Inventory']['WhiteList']['Filepath'], 'r') as _:
+           lines= _.readlines()
+
+        magPriority=max(rules(mag.mag, cfg['Inventory']['WhiteList']['Rules']))
+
+        whiteList=[]
+        blackList=[]
+
+        for line in lines:
+            if not(line.startswith('#') or line.startswith('\n')):
+                net, sta, *_=line.split()
+                priority=int(_[0]) if _ else int(cfg['Inventory']['WhiteList']['Priority'])
+
+                if priority==0:
+                    blackList.append([net,sta])
+
+                elif priority >= magPriority:
+                    whiteList.append([net,sta,priority])
+
+def dump(dictionary):
+    return yaml.dump(dictionary, indent=2, sort_keys=True)
+
+# decorator function for logging
+def log(func):
+    def inner(*args, **kwargs):
+        func(*args, **kwargs)
+        logger.info(st.__str__(extended=True))
+    return inner
+
+# decorator function for timing
+def time(func):
+    def inner(*args, **kwargs):
+        start = tm.time()
+        func(*args, **kwargs)
+        logger.info('Function \'{}\' executed {} seconds'.format(func.__name__,round(tm.time()-start,2)))
+    return inner
+
+# add more properties to Trace
+Trace.enabled=False # enabled for processing
+Trace.distance=None
+Trace.azimuth=None
+