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nilchia committed Feb 1, 2025
1 parent 2a10628 commit cde9a83
Showing 1 changed file with 6 additions and 6 deletions.
Original file line number Diff line number Diff line change
Expand Up @@ -12,7 +12,7 @@
</stdio>
<command><![CDATA[
#if $data == "complete":
cellxgene launch --host 0.0.0.0 --port 80 --title mouse_sciatic_nerve --user-generated-data-dir annotation_files "/data/all_final_population.h5ad" &&
cellxgene launch --host 0.0.0.0 --port 80 --title mouse_sciatic_nerve --user-generated-data-dir annotation_files "/data/all.h5ad" &&
#else if $data == "Adipocytes":
cellxgene launch --host 0.0.0.0 --port 80 --title mouse_sciatic_nerve_adipocytes --user-generated-data-dir annotation_files "/data/adipo.h5ad" &&
#else:
Expand All @@ -33,7 +33,6 @@
<collection name="user_generated" type="list" label="CellxGene user annotations and gene sets">
<discover_datasets pattern="__name_and_ext__" directory="annotation_files/"/>
</collection>

</outputs>
<tests>
</tests>
Expand All @@ -43,9 +42,10 @@ This tool provides an interactive environment to visualize single cell RNA-seq d
Title: FGF signaling modulates a chondrocyte-like state of peripheral nerve fibroblast during aging.
How to use this tool:
1. Select the dataset you want to visualize.
2. Click on the "Run tool" button.
3. Wait for a few seconds for the tool to start.
4. click on the eye icon to open the visualization in a new tab. (or alternatively, click on the "Interactive tools" bottom on the top left corner of the page and select the tool from the list)
- 1. Select the dataset you want to visualize.
- 2. Click on the "Run tool" button.
- 3. Wait for a few seconds for the tool to start.
- 4. click on the eye icon to open the visualization in a new tab. (or alternatively, click on the "Interactive tools" bottom on the top left corner of the page and select the tool from the list)
]]></help>
</tool>

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