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NF: volume computation function for nifti masks #952

Merged
merged 9 commits into from
Oct 20, 2020
Merged

NF: volume computation function for nifti masks #952

merged 9 commits into from
Oct 20, 2020

Commits on Sep 9, 2020

  1. Added a volume computation function 

    Compute volume of mask image.
Equivalent to "fslstats /path/file.nii -V"
    @JulianKlug
    JulianKlug authored Sep 9, 2020
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Commits on Oct 18, 2020

  1. Added commandline and tests for imagestats volume computation

    @JulianKlug
    JulianKlug committed Oct 18, 2020
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  2. Fix style errors 

    - blank lines
- variable declaration in example
    @JulianKlug
    JulianKlug committed Oct 18, 2020
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  3. Apply suggestions from code review: Removing unused code 

    Co-authored-by: Chris Markiewicz <[email protected]>
    @JulianKlug @effigies
    JulianKlug and effigies authored Oct 18, 2020
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  4. Apply suggestions from code review: Use header.get_zooms instead of h… 

    …eader.pixdim

Co-authored-by: Chris Markiewicz <[email protected]>
    @JulianKlug @effigies
    JulianKlug and effigies authored Oct 18, 2020
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  5. Split Mask_volume into a function for voxels and a function for volum… 

    …e in mm3

- use a mask-like volume for testing
    @JulianKlug
    JulianKlug committed Oct 18, 2020
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Commits on Oct 19, 2020

  1. Fix failing docstring

    @JulianKlug
    JulianKlug committed Oct 19, 2020
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  2. Apply suggestions from code review 

    Co-authored-by: Chris Markiewicz <[email protected]>
    @JulianKlug @effigies
    JulianKlug and effigies authored Oct 19, 2020
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  3. Style issues, use capsys

    @JulianKlug
    JulianKlug committed Oct 19, 2020
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