added mysql tests

README.md

@@ -2,9 +2,9 @@
 
 An R2RML implementation that can export relational database contents as RDF graphs, based on an [R2RML](http://www.w3.org/TR/r2rml/) mapping document. Contains an R2RML [mapping document](https://github.com/nkons/r2rml-parser/blob/master/dspace/dspace-mapping.rdf) for the [DSpace](http://www.dspace.org/) institutional repository solution. Early results presented in [1]. More up-to-date results in the [wiki](https://github.com/nkons/r2rml-parser/wiki).
 
-## R2RML Implementation
+## Implementation details
 
-R2RML implementation written fully in Java, using Apache Jena, Spring, JUnit, and Maven. Tested against MySQL and PostgreSQL.
+R2RML implementation written fully in Java 7, using Apache Jena 2.7, Spring 3.2, JUnit 4.8, and Maven 3.0. Tested against MySQL 5.6 and PostgreSQL 9.2.
 
 ## Licence
 
@@ -17,5 +17,3 @@ You can use the work as long as you provide proper reference, e.g. a link to the
 ## Publications
 
 [1] N. Konstantinou, D.E. Spanos, N. Houssos, N. Mitrou: Exposing Scholarly Information as Linked Open Data: RDFizing DSpace contents, In The Electronic Library, to appear (2013).
-
-[![githalytics.com alpha](https://cruel-carlota.pagodabox.com/e4cf60f85b533bc770726ca7ebed0891 "githalytics.com")](http://githalytics.com/nkons/r2rml-parser)

src/test/java/gr/ekt/r2rml/test/ComplianceTests.java

@@ -81,7 +81,7 @@ public void testAll() {
 		int counter = 0;
 		for (String key : tests.keySet()) {
 			if (counter == 19) { //(counter > 4 && counter < 6) {
-				String folder = "src/test/resources/" + key + "/";
+				String folder = "src/test/resources/postgres/" + key + "/";
 				initialiseSourceDatabase(folder + "create.sql");
 
 				for (String mappingFile : tests.get(key)) {
@@ -113,7 +113,7 @@ public void testAll() {
 	@Test
 	public void testSingle() {
 		log.info("test single. Careful, database 'test' will be erased and re-created!");
-		String folder = "src/test/resources/D002-1table2columns1row/";
+		String folder = "src/test/resources/postgres/D002-1table2columns1row/";
 		initialiseSourceDatabase(folder + "create.sql");
 
 		//Override property file
@@ -211,5 +211,4 @@ private void openConnection() {
 			e.printStackTrace();
 		}
 	}
-
 }

src/test/resources/mysql/D000-1table1column0rows/create.sql

@@ -0,0 +1,3 @@
+CREATE TABLE Student (
+       Name varchar(50)
+);

src/test/resources/mysql/D001-1table1column1row/create.sql

@@ -0,0 +1,4 @@
+CREATE TABLE Student (
+Name varchar(50)
+);
+INSERT INTO Student VALUES ('Venus')

src/test/resources/mysql/D002-1table2columns1row/create.sql

@@ -0,0 +1,5 @@
+CREATE TABLE `Student` (
+`ID` INTEGER,
+`Name` VARCHAR(15)
+);
+INSERT INTO `Student` (`ID`, `Name`) VALUES(10,'Venus');

src/test/resources/mysql/D003-1table3columns1row/create.sql

@@ -0,0 +1,6 @@
+CREATE TABLE Student (
+ID INTEGER,
+FirstName VARCHAR(50),
+LastName VARCHAR(50)
+);
+INSERT INTO Student (ID, FirstName, LastName) VALUES (10,'Venus', 'Williams');

src/test/resources/mysql/D004-1table2columns1row/create.sql

@@ -0,0 +1,5 @@
+CREATE TABLE Student_Sport(
+      Student varchar(50),
+      Sport varchar(50)
+);
+INSERT INTO Student_Sport (Student,Sport) VALUES ('Venus', 'Tennis');

src/test/resources/mysql/D005-1table3columns3rows2duplicates/create.sql

@@ -0,0 +1,7 @@
+CREATE TABLE IOUs (
+      fname VARCHAR(20),
+      lname  VARCHAR(20),
+      amount FLOAT);
+INSERT INTO IOUs (fname, lname, amount) VALUES ('Bob', 'Smith', 30);
+INSERT INTO IOUs (fname, lname, amount) VALUES ('Sue', 'Jones', 20);
+INSERT INTO IOUs (fname, lname, amount) VALUES ('Bob', 'Smith', 30);

src/test/resources/mysql/D006-1table1primarykey1column1row/create.sql

@@ -0,0 +1,4 @@
+CREATE TABLE Student (
+Name varchar(50) PRIMARY KEY
+);
+INSERT INTO Student (Name) VALUES ('Venus');

src/test/resources/mysql/D007-1table1primarykey2columns1row/create.sql

@@ -0,0 +1,6 @@
+CREATE TABLE Student (
+ID integer,
+Name varchar(50),
+PRIMARY KEY (ID)
+);
+INSERT INTO Student (ID, Name) VALUES(10,'Venus');

src/test/resources/mysql/D008-1table1compositeprimarykey3columns1row/create.sql

@@ -0,0 +1,7 @@
+CREATE TABLE Student (
+ID integer,
+Name varchar(50),
+Sport varchar (50),
+PRIMARY KEY (ID,Name)
+);
+INSERT INTO Student (ID, Name,Sport) VALUES(10,'Venus Williams','Tennis');

src/test/resources/mysql/D009-2tables1primarykey1foreignkey/create.sql

@@ -0,0 +1,18 @@
+CREATE TABLE Sport (
+ID integer,
+Name varchar (50),
+PRIMARY KEY (ID)
+);
+
+CREATE TABLE Student (
+ID integer,
+Name varchar(50),
+Sport integer,
+PRIMARY KEY (ID),
+FOREIGN KEY(Sport) REFERENCES Sport(ID)
+);
+
+INSERT INTO Sport (ID, Name) VALUES (100,'Tennis');
+INSERT INTO Student (ID, Name, Sport) VALUES (10,'Venus Williams', 100);
+INSERT INTO Student (ID, Name, Sport) VALUES (20,'Demi Moore', NULL);
+

src/test/resources/mysql/D010-1table1primarykey3colums3rows/create.sql

@@ -0,0 +1,9 @@
+CREATE TABLE `Country Info` (
+  `Country Code` INTEGER PRIMARY KEY,
+  Name VARCHAR(100),
+  `ISO 3166` VARCHAR(10)
+);
+
+INSERT INTO `Country Info` (`Country Code`, Name, `ISO 3166`) VALUES (1, 'Bolivia, Plurinational State of', 'BO');
+INSERT INTO `Country Info` (`Country Code`, Name, `ISO 3166`) VALUES (2, 'Ireland', 'IE');
+INSERT INTO `Country Info` (`Country Code`, Name, `ISO 3166`) VALUES (3, 'Saint Martin (French part)', 'MF');

src/test/resources/mysql/D011-M2MRelations/create.sql

@@ -0,0 +1,29 @@
+CREATE TABLE Student (
+ID integer PRIMARY KEY,
+FirstName varchar(50),
+LastName varchar(50)
+);
+CREATE TABLE Sport (
+ID integer PRIMARY KEY,
+Description varchar(50)
+);
+CREATE TABLE Student_Sport (
+ID_Student integer,
+ID_Sport integer,
+PRIMARY KEY (ID_Student,ID_Sport),
+FOREIGN KEY (ID_Student) REFERENCES Student(ID),
+FOREIGN KEY (ID_Sport) REFERENCES Sport(ID)
+);
+
+INSERT INTO Student (ID,FirstName,LastName) VALUES (10,'Venus', 'Williams');
+INSERT INTO Student (ID,FirstName,LastName) VALUES (11,'Fernando', 'Alonso');
+INSERT INTO Student (ID,FirstName,LastName) VALUES (12,'David', 'Villa');
+
+INSERT INTO Sport (ID, Description) VALUES (110,'Tennis');
+INSERT INTO Sport (ID, Description) VALUES (111,'Football');
+INSERT INTO Sport (ID, Description) VALUES (112,'Formula1');
+
+INSERT INTO Student_Sport (ID_Student, ID_Sport) VALUES (10,110);
+INSERT INTO Student_Sport (ID_Student, ID_Sport) VALUES (11,111);
+INSERT INTO Student_Sport (ID_Student, ID_Sport) VALUES (11,112);
+INSERT INTO Student_Sport (ID_Student, ID_Sport) VALUES (12,111);

src/test/resources/mysql/D011-M2MRelations/r2rmla.ttl

@@ -0,0 +1,66 @@
+@prefix rr: <http://www.w3.org/ns/r2rml#> .
+@prefix foaf: <http://xmlns.com/foaf/0.1/> .
+@prefix ex: <http://example.com/> .
+@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
+@base <http://example.com/base/> .
+
+<TriplesMap1>
+    a rr:TriplesMap;
+
+    rr:logicalTable [ rr:sqlQuery """
+       SELECT Student.ID as ID,
+              Student.FirstName as FirstName,
+              Student.LastName as LastName,
+              Sport.Description as Description,
+              Sport.ID as Sport_ID
+       FROM Student,Sport,Student_Sport
+       WHERE Student.ID = Student_Sport.ID_Student
+       AND Sport.ID = Student_Sport.ID_Sport;
+       """; ];
+
+    rr:subjectMap [ rr:template "http://example.com/{ID}/{FirstName};{LastName}" ];
+
+    rr:predicateObjectMap
+    [ 
+      rr:predicate	ex:id ; 
+      rr:objectMap	[ rr:column "ID"; ]
+    ];
+
+    rr:predicateObjectMap
+    [ 
+      rr:predicate	ex:firstName ; 
+      rr:objectMap	[ rr:column "FirstName" ]
+    ];
+
+    rr:predicateObjectMap
+    [ 
+      rr:predicate	ex:lastName ; 
+      rr:objectMap	[ rr:column "LastName" ]
+    ];
+
+    rr:predicateObjectMap
+    [ 
+      rr:predicate	ex:plays ; 
+      rr:objectMap	[ rr:template "http://example.com/{Sport_ID}/{Description}" ]
+    ]
+    .
+
+<TriplesMap2>
+    a rr:TriplesMap;
+
+	rr:logicalTable [ rr:tableName  "\"Sport\"" ];
+
+    rr:subjectMap [ rr:template "http://example.com/{\"ID\"}/{\"Description\"}"; ];
+
+    rr:predicateObjectMap
+    [ 
+      rr:predicate	ex:id ; 
+      rr:objectMap	[ rr:column "\"ID\""; ]
+    ];
+
+    rr:predicateObjectMap
+    [ 
+      rr:predicate	ex:description ; 
+      rr:objectMap	[ rr:column "\"Description\"" ]
+    ]
+    .

src/test/resources/mysql/D012-2tables2duplicates0nulls/create.sql

@@ -0,0 +1,17 @@
+CREATE TABLE IOUs (
+      fname VARCHAR(20),
+      lname VARCHAR(20),
+      amount FLOAT);
+
+CREATE TABLE Lives (
+      fname VARCHAR(20),
+      lname VARCHAR(20),
+      city VARCHAR(20));
+
+INSERT INTO IOUs (fname, lname, amount) VALUES ('Bob', 'Smith', 30);
+INSERT INTO IOUs (fname, lname, amount) VALUES ('Sue', 'Jones', 20);
+INSERT INTO IOUs (fname, lname, amount) VALUES ('Bob', 'Smith', 30);
+
+INSERT INTO Lives (fname, lname, city) VALUES ('Bob', 'Smith', 'London');
+INSERT INTO Lives (fname, lname, city) VALUES ('Sue', 'Jones', 'Madrid');
+INSERT INTO Lives (fname, lname, city) VALUES ('Bob', 'Smith', 'London');

src/test/resources/D012-2tables2duplicates0nulls/r2rmlb.ttl → src/test/resources/mysql/D012-2tables2duplicates0nulls/r2rmlb.ttl

@@ -36,6 +36,6 @@
     rr:predicateObjectMap
     [ 
       rr:predicate	ex:city ; 
-      rr:objectMap	[ rr:column "\"city\""; ]
+      rr:objectMap	[ rr:constant "At"; ]
     ];
 	.

src/test/resources/mysql/D013-1table1primarykey3columns2rows1nullvalue/create.sql

@@ -0,0 +1,8 @@
+CREATE TABLE Person (
+ID integer,
+Name varchar(50),
+DateOfBirth varchar(50),
+PRIMARY KEY (ID)
+);
+INSERT INTO Person (ID, Name, DateOfBirth) VALUES (1,'Alice', NULL);
+INSERT INTO Person (ID, Name, DateOfBirth) VALUES (2,'Bob', 'September, 2010');

src/test/resources/mysql/D014-3tables1primarykey1foreignkey/create.sql

@@ -0,0 +1,22 @@
+CREATE TABLE DEPT (
+      deptno INTEGER UNIQUE,
+      dname VARCHAR(30),
+      loc VARCHAR(100));
+
+CREATE TABLE EMP (
+      empno INTEGER PRIMARY KEY,
+      ename VARCHAR(100),
+      job VARCHAR(30),
+	  deptno INTEGER REFERENCES DEPT (deptno),
+	  etype VARCHAR(30));
+
+CREATE TABLE LIKES (
+      id INTEGER,
+      likeType VARCHAR(30),
+      likedObj VARCHAR(100));
+
+INSERT INTO DEPT (deptno, dname, loc) VALUES (10, 'APPSERVER', 'NEW YORK');
+INSERT INTO EMP (empno, ename, job, deptno, etype ) VALUES (7369, 'SMITH', 'CLERK', 10, 'PART_TIME');
+
+INSERT INTO LIKES (id, likeType, likedObj) VALUES (7369, 'Playing', 'Soccer');
+INSERT INTO LIKES (id, likeType, likedObj) VALUES (7369, 'Watching', 'Basketball');

src/test/resources/mysql/D015-1table3columns1composityeprimarykey3rows2languages/create.sql

@@ -0,0 +1,11 @@
+CREATE TABLE Country (
+  Code VARCHAR(2),
+  Name VARCHAR(100),
+  Lan VARCHAR(10),
+  PRIMARY KEY (Code,Lan)
+);
+INSERT INTO Country (Code, Name, Lan) VALUES ('BO', 'Bolivia, Plurinational State of', 'EN');
+INSERT INTO Country (Code, Name, Lan) VALUES ('BO', 'Estado Plurinacional de Bolivia', 'ES');
+INSERT INTO Country (Code, Name, Lan) VALUES ('IE', 'Ireland', 'EN');
+INSERT INTO Country (Code, Name, Lan) VALUES ('IE', 'Irlanda', 'ES');
+

src/test/resources/mysql/D016-1table1primarykey10columns3rowsSQLdatatypes/create.sql

@@ -0,0 +1,25 @@
+CREATE TABLE Patient (
+ID INTEGER,
+FirstName VARCHAR(50),
+LastName VARCHAR(50),
+Sex VARCHAR(6),
+Weight REAL,
+Height FLOAT,
+BirthDate DATE,
+EntranceDate TIMESTAMP,
+PaidInAdvance BOOLEAN,
+Photo VARBINARY(200),
+PRIMARY KEY (ID)
+);
+
+INSERT INTO Patient (ID, FirstName,LastName,Sex,Weight,Height,BirthDate,EntranceDate,PaidInAdvance,Photo) 
+VALUES (10,'Monica','Geller','female',80.25,1.65,'1981-10-10','2009-10-10 12:12:22',FALSE,
+X'89504E470D0A1A0A0000000D49484452000000050000000508060000008D6F26E50000001C4944415408D763F9FFFEBFC37F062005C3201284D031F18258CD04000EF535CBD18E0E1F0000000049454E44AE426082');
+
+INSERT INTO Patient (ID, FirstName,LastName,Sex,Weight,Height,BirthDate,EntranceDate,PaidInAdvance,Photo) 
+VALUES (11,'Rachel','Green','female',70.22,1.70,'1982-11-12','2008-11-12 09:45:44',TRUE,
+X'89504E470D0A1A0A0000000D49484452000000050000000508060000008D6F26E50000001C4944415408D763F9FFFF3FC37F062005C3201284D031F18258CD04000EF535CBD18E0E1F0000000049454E44AE426082');
+
+INSERT INTO Patient (ID, FirstName,LastName,Sex,Weight,Height,BirthDate,EntranceDate,PaidInAdvance,Photo) 
+VALUES (12,'Chandler','Bing','male',90.31,1.76,'1978-04-06','2007-03-12 02:13:14',TRUE,
+X'89504E470D0A1A0A0000000D49484452000000050000000508060000008D6F26E50000001C4944415408D763F9FFFEBFC37F062005C3201284D031F18258CD04000EF535CBD18E0E1F0000000049454E44AE426082');

src/test/resources/mysql/D017-I18NnoSpecialChars/create.sql

@@ -0,0 +1,15 @@
+CREATE TABLE 植物 (
+  名 VARCHAR(10),
+  使用部 VARCHAR(10),
+  条件 VARCHAR(10),
+  PRIMARY KEY (名, 使用部)
+);
+INSERT INTO 植物 (名, 使用部, 条件) VALUES ('しそ', '葉', '新鮮な');
+
+CREATE TABLE 成分 (
+  皿  VARCHAR(10),
+  植物名 VARCHAR(10),
+  使用部 VARCHAR(10),
+  FOREIGN KEY (植物名, 使用部) REFERENCES 植物(名, 使用部)
+);
+INSERT INTO 成分 (皿, 植物名, 使用部) VALUES ('しそのとまと', 'しそ', '葉');

src/test/resources/D017-I18NnoSpecialChars/directGraph.ttl → src/test/resources/mysql/D017-I18NnoSpecialChars/directGraph.ttl

@@ -1,11 +1,11 @@
-@base <http://example.com/base/> .
-
-<植物/名=しそ;使用部=葉> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <植物> .
-<植物/名=しそ;使用部=葉> <植物#使用部> "葉" .       
-<植物/名=しそ;使用部=葉> <植物#名>  "しそ" .
-<植物/名=しそ;使用部=葉> <植物#条件> "新鮮な" .
-_:a <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <成分> .
-_:a <成分#使用部> "葉" .
-_:a <成分#植物名> "しそ" .
-_:a <成分#ref-植物名;使用部> <植物/名=しそ;使用部=葉> .
-_:a <成分#皿> "しそのとまと" .
+@base <http://example.com/base/> .
+
+<植物/名=しそ;使用部=葉> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <植物> .
+<植物/名=しそ;使用部=葉> <植物#使用部> "葉" .       
+<植物/名=しそ;使用部=葉> <植物#名>  "しそ" .
+<植物/名=しそ;使用部=葉> <植物#条件> "新鮮な" .
+_:a <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <成分> .
+_:a <成分#使用部> "葉" .
+_:a <成分#植物名> "しそ" .
+_:a <成分#ref-植物名;使用部> <植物/名=しそ;使用部=葉> .
+_:a <成分#皿> "しそのとまと" .

src/test/resources/mysql/D018-1table1primarykey2columns3rows/create.sql

@@ -0,0 +1,7 @@
+CREATE TABLE Student (
+ID INTEGER,
+Name CHAR(15) 
+);
+INSERT INTO Student (ID,Name) VALUES (10,'Venus');
+INSERT INTO Student (ID,Name) VALUES (20,'Fernando');
+INSERT INTO Student (ID,Name) VALUES (30,'David');

src/test/resources/mysql/D019-1table1primarykey3columns3rows/create.sql

@@ -0,0 +1,8 @@
+CREATE TABLE Employee (
+ID INTEGER,
+FirstName VARCHAR(50),
+LastName VARCHAR(50)
+);
+INSERT INTO Employee (ID,FirstName,LastName) VALUES (10,'http://example.com/ns#Jhon','Smith');
+INSERT INTO Employee (ID,FirstName,LastName) VALUES (20,'Carlos','Mendoza');
+INSERT INTO Employee (ID,FirstName,LastName) VALUES (30,'Juan Daniel','Crespo');

src/test/resources/mysql/D020-1table1column5rows/create.sql

@@ -0,0 +1,9 @@
+CREATE TABLE Student (
+Name VARCHAR(50)
+);
+
+INSERT INTO Student (Name) VALUES ('http://example.com/company/Alice');
+INSERT INTO Student (Name) VALUES ('Bob');
+INSERT INTO Student (Name) VALUES ('Bob/Charles');
+INSERT INTO Student (Name) VALUES ('path/../Danny');
+INSERT INTO Student (Name) VALUES ('Emily Smith');