RENIN generates parametric gene regulatory networks, predicting both cis-regulatory elements and transcription factors.
You can install RENIN with devtools:
library(devtools)
install_github("nledru/RENIN")Additional dependencies are listed in the DESCRIPTION file. RENIN is designed to work within the Seurat workflow.
For a brief introduction to running RENIN on a single cell dataset, see the vignette at Getting started.