v0.1.6

nonmem2rx 0.1.6

• Add more flexible replacement of ETA and other values #188

• Add ability to use nonmem2rx with a NONMEM control stream text input

What's Changed

• Fix the Replace grammar to accept ETA(#) on rhs by @mattfidler in #189

Full Changelog: v0.1.5...v0.1.6

v0.1.5

nonmem2rx 0.1.5

• Be more forgiving in the validation and remove IDs without
  observations when solving the IPRED problem.

• Binary linkage to dparser changed to structure only, meaning
  nonmem2rx may not have to be updated if dparser is updated.

What's Changed

• Be a bit more careful of ipred/pred solve by @mattfidler in #179
• Remove rxode2parse by @mattfidler in #183
• Remove binary linkage to dparser by @mattfidler in #184

Full Changelog: v0.1.4...v0.1.5

v0.1.4

nonmem2rx 0.1.4

• When reading NONMEM results from xml will try nm: prefixed tags
  and non-nm: prefixed tags.

• Omega and Sigma prior estimates are currently ignored (theta priors
  were already ignored)

• Improve reading in theta values from the xml

• Read all NONMEM files using latin1 encoding to allow single byte
  parser to work

• When lines in the NONMEM input dataset start with # they are now
  ignored.

• When all IDs are zero, NONMEM assumes restarting
  time gives different IDs; this is now reflected in NONMEM
  translation of IDs.

• With linCmt() parsing, expand the scope of conflicting parameters
  that will be renamed with an import.

• Added better parsing for ELSE where there is another IF on the
  next line.

• Prefixed conflicting VP with rxm. when linCmt() models to be
  more accommodating when importing linear compartment models.

v0.1.3

• Added explicit requirement for rxode2 2.0.13

• Added support of DADT(#) statements on the right side of the
  equation, i.e. DADT(3) = DADT(1) + DADT(2) (#164)

• Added support of ADVAN#, TRANS# (#161)

• Added more NONMEM-specific solving options

• Fixed security related format issues as requested by CRAN #167

• Now omega, thetaMat, dfObs and dfSub are incorporated into
  model function (by default). You can change this with the
  nonmem2rx keep argument

• Using the rxode2 2.0.13 makes sure that the solves for models
  where the endpoint is not determined in the typical nlmixr2 style
  will validate more often (due to a bug in solving in rxode2).

What's Changed

• Increment version number to 0.1.2.9000 and require rxode2 2.0.12 by @mattfidler in #158
• 159 sslag options by @mattfidler in #160
• Add test case and grammar change for commas in advan/trans by @mattfidler in #164
• Add fix/test for dadt(#) on lhs by @mattfidler in #165
• Add to news for recent changes by @mattfidler in #168
• 167 cran maintainence by @mattfidler in #169

Full Changelog: v0.1.2...v0.1.3

v0.1.2

nonmem2rx 0.1.2

• Added support for ADVAN5 and ADVAN7 models

• Add parsing of accept/ignore characters for example IGNORE=(C='C')
  (See Issue #140)

• Add more robust reading of NONMEM information (and add source) in
  nminfo() (See issue #142)

• Since NONMEM does not protect divide by zeros by default, the
  default for solveZero is changed to solveZero = TRUE for
  nonmem2rx objects.

• Fixed bug for renaming eta and theta when they are renamed so
  that the ui$iniDf does not match the theta# or eta# (Issue
  #153)

• Turned off testing of the as.nonmem2rx example since it took too
  much time (according to CRAN)

What's Changed

• 137 explain systemfile by @mattfidler in #139
• 140 parse error for data with character equality test by @mattfidler in #141
• 142 lotri issue by @mattfidler in #144
• Fix xml by @mattfidler in #146
• Add safeZero=FALSE default by @mattfidler in #147
• Update README.md by @mattfidler in #148
• Initial implementation by @mattfidler in #151
• Fix sigma/omgea parse with boundaries by @mattfidler in #152
• Make sure that theta/eta are always ordered like NONMEM by @mattfidler in #154
• Add lst file and test for eta order in #156 by @mattfidler in #155

Full Changelog: v0.1.1...v0.1.2

v0.1.1

v0.1.1

• Fix internal memory issue (LTO, valgrind etc)

Full Changelog: v0.1.0...v0.1.1

v0.1.0

Initial release of nonmem2rx