v2.0.14

rxode2parse 2.0.14

• 'linCmt()' translations of 'alpha', 'beta', 'gamma', 'k21', 'k31',
  'vc' now error instead of ignoring 'gamma' and 'k31' to give 2 cmt
  solution

• transit compartment internal code now changes dose to 0.0 when no
  dose has been administered to the depot compartment. This way dosing
  to the central compartment (without dosing to the transit
  compartment) will not give a NA for the depot compartment (and
  consequently for the central compartment)

• Moved rxDerived here and added tests for it here as well.

• Moved etTransParse here and added tests for it here as well (makes
  up most of etTrans). In addition the following changes were made
  to etTransParse()/etTrans():

  • The internal translation (etTrans()) will not drop times when
    infusions stop. Before, if the infusion stopped after the last
    observation the time when the infusion stopped would be dropped.
    This interferes with linCmt() models.

  • Breaking change/bug fix evid=2 are considered observations when
    translating data to internal rxode2 event structure

  • Fix edge case to find infusion duration when it is the first item
    of the dosing record at time 0.

• Fixed a bug for certain infusions where the rate, ii and/or
  ss data items were dropped from the output when addDosing=TRUE

• Also have internal functions to convert between classic NONMEM
  events and rxode2 events

• Have an internal function that gives information on the linear
  compartmental model translation type, which could be useful for
  babelmixr2

• 'time' in model is now case insensitive

• Use function declaration in rxode2parseGetTranslation() to
  determine thread safety of functions available to rxode2

• Add check for correct number of function arguments to parser.

• Like R, known functions can be assigned as a variable and the
  function can still be called (while not changing the variable
  value). For example you can have a variable gamma as well as a
  function gamma().

• Fix garbled error messages that occur with certain messages.

• Fixed errors that occurred when using capitalized AMT variables in
  the model.

What's Changed

• Parse line syntax err first, only use after w/~ by @mattfidler in #12
• Use number of arguments from rxode2 translations by @mattfidler in #13
• expand rxode2parse to allow testing of #14 by @mattfidler in #15
• Make rxode2parse closer to rxModelVars; Test #17 by @mattfidler in #18
• Add failing test for #19 by @mattfidler in #20
• 21 time column is duplicated in rxsolve output by @mattfidler in #22
• Overly protective (likely fix gctorture/valgrind) by @mattfidler in #25
• 23 pow by @mattfidler in #26
• Commit things taken from the multiexp by @mattfidler in #32
• Et trans by @mattfidler in #35
• Version bump by @mattfidler in #37
• Add error for unsuppored trans by @mattfidler in #40

Full Changelog: v2.0.13...v2.0.14

What's Changed

• Parse line syntax err first, only use after w/~ by @mattfidler in #12
• Use number of arguments from rxode2 translations by @mattfidler in #13
• expand rxode2parse to allow testing of #14 by @mattfidler in #15
• Make rxode2parse closer to rxModelVars; Test #17 by @mattfidler in #18
• Add failing test for #19 by @mattfidler in #20
• 21 time column is duplicated in rxsolve output by @mattfidler in #22
• Overly protective (likely fix gctorture/valgrind) by @mattfidler in #25
• 23 pow by @mattfidler in #26
• Commit things taken from the multiexp by @mattfidler in #32
• Et trans by @mattfidler in #35
• Version bump by @mattfidler in #37
• Add error for unsuppored trans by @mattfidler in #40

Full Changelog: v2.0.13...v2.0.14