Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Fix prepareFastGapFill bug related to KEGGMatrix #1

Open
wants to merge 1 commit into
base: develop
Choose a base branch
from

Conversation

nmendozam
Copy link
Owner

Rectifies KEGGMatrixLoad default value.

The bug was mentioned here.
When executing prepareFastGapFill this error happens:

Error using load
Unable to read file 'KEGGMatrix'. No such file or directory.

Error in generateSUXComp (line 49)
    load KEGGMatrix

Error in prepareFastGapFill (line 86)
MatricesSUX = generateSUXComp(consistModel,dictionary, filename,blackList,listCompartments);

In the comments says that the default values for KEGGMatrixLoad is 0 but in the code is 1 which makes it try to load something that hasn't been downloaded, jet.

I hereby confirm that I have:

  • Tested my code on my own machine
  • Followed the guidelines in the Contributing Guide
  • Selected develop as a target branch (top left drop-down menu)

(Note: You may replace [ ] with [X] to check the box)

Rectifies KEGGMatrixLoad default value.
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

1 participant