remove change permissions #34
Workflow file for this run
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| name: update-ss3-test-models-mac | |
| on: | |
| push: | |
| jobs: | |
| update-ss3-test-models-mac: | |
| runs-on: macos-latest | |
| env: | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| R_KEEP_PKG_SOURCE: yes | |
| steps: | |
| - name: Checkout repo | |
| uses: actions/checkout@v4 | |
| - name: setup R | |
| uses: r-lib/actions/setup-r@v2 | |
| - name: R.version | |
| run: Rscript -e 'R.version' | |
| - name: install remotes | |
| run: Rscript -e 'install.packages("remotes")' | |
| - name: install r4ss | |
| run: Rscript -e 'remotes::install_github("r4ss/r4ss")' | |
| - name: install other r packages | |
| run: Rscript -e 'install.packages(c("purrr","furrr","parallely","future"))' | |
| - name: try get_ss3_exe | |
| run: Rscript -e 'r4ss::get_ss3_exe(dir = file.path(getwd(), "models"))' | |
| # - name: use download artifact | |
| # uses: actions/download-artifact@v4 | |
| # with: | |
| # name: ss3-macos-13 | |
| # github-token: ${{ secrets.GITHUB_TOKEN}} # token with actions:read permissions on target repo | |
| # repository: nmfs-ost/ss3-source-code | |
| # run-id: 8664716853 | |
| - name: Run models | |
| run: | | |
| mod_names <- list.dirs(file.path("models"), full.names = FALSE, recursive = FALSE) | |
| mod_paths <- list.dirs(file.path("models"), full.names = TRUE, recursive = FALSE) | |
| print(mod_names) | |
| ncores <- parallelly::availableCores(omit = 1) | |
| future::plan(future::multisession, workers = ncores) | |
| mod_ran <- furrr::future_map(mod_paths, function(x){r4ss::run(dir = x, exe = file.path(getwd(), "models/ss3"), verbose = TRUE)}) | |
| print(mod_ran) | |
| shell: Rscript {0} |