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  1. altanalyze altanalyze Public

    AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available …

    Python 99 30

  2. Human-Bone-Marrow-Titration-Atlas Human-Bone-Marrow-Titration-Atlas Public

    An Immunophenotypic and Transcriptomic Human Bone Marrow Atlas

    Python 9 5

  3. BAM-to-Junction-BED BAM-to-Junction-BED Public

    Uses SAMTools, Python 2.7 and PySam to extract either junctions or exon read counts for known and novel junctions and exons. Requires an indexed BAM file with genomic coordinates

    Python 5 2

  4. awesome-single-cell awesome-single-cell Public

    Forked from seandavi/awesome-single-cell

    List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.

    3 2

  5. LineageProfilerIterate LineageProfilerIterate Public

    Sample Classification and Model Evaluation in LineageProfiler

    Python

  6. scRNA-tools scRNA-tools Public

    Forked from scRNA-tools/scRNA-tools

    Table of software for the analysis of single-cell RNA-seq data.

    R 1