Main changes:
- support for VEP and Ensembl v113
- switch from exomeDepth to JACNEx for CNV calls, including breakpoints support
- add pLI annotations
- limit to gencode basic transcripts
Note:
when you update grexome-TIMC-Secondary, you must also update your VEP install to v113. If you want pLI annotations you must also install the pLI VEP plugin, as well as its associated data file.
Full Changelog:
v1.2.0...v1.3.0