Smooth calcium wave #18
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| name: CI | |
| on: | |
| workflow_dispatch: | |
| push: | |
| branches: [main] | |
| pull_request: | |
| branches: [main] | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| env: | |
| NBCONVERT_JOBS: '4' | |
| LITERATE_PROC: '3' | |
| ALLOWERRORS: 'false' | |
| CACHE_NUM: '1' | |
| JULIA_CONDAPKG_BACKEND: 'Null' | |
| JULIA_CI: 'true' | |
| NBCACHE: '.cache' | |
| jobs: | |
| CI: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v4 | |
| - name: Setup Python | |
| uses: actions/setup-python@v5 | |
| id: setup-python | |
| with: | |
| python-version: '3.x' | |
| - name: Cache python | |
| uses: actions/cache@v4 | |
| if: ${{ contains(runner.name, 'GitHub Actions') }} | |
| id: cache-py | |
| with: | |
| key: ${{ runner.os }}-pip-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('requirements.txt') }} | |
| path: | | |
| ${{ env.pythonLocation }}/lib | |
| ${{ env.pythonLocation }}/bin | |
| - name: Install Python dependencies | |
| if: ${{ !contains(runner.name, 'GitHub Actions') || steps.cache-py.outputs.cache-hit != 'true' }} | |
| run: pip install -r requirements.txt | |
| - name: Cache executed notebooks | |
| uses: actions/cache@v4 | |
| id: cache-nb | |
| with: | |
| path: ${{ env.NBCACHE }} | |
| key: ${{ runner.os }}-nb-${{ env.CACHE_NUM }}-${{ hashFiles('src/**', 'Project.toml', 'Manifest.toml') }}-${{ hashFiles('docs/**/*.ipynb', 'docs/**/*.jl') }} | |
| restore-keys: | | |
| ${{ runner.os }}-nb-${{ env.CACHE_NUM }}-${{ hashFiles('src/**', 'Project.toml', 'Manifest.toml') }}- | |
| - name: Read Julia version | |
| id: read_toml | |
| run: echo "value=$(python -c 'import tomllib; from pathlib import Path; print(tomllib.loads(Path("Manifest.toml").read_text())["julia_version"])')" >> "$GITHUB_OUTPUT" | |
| - name: Setup Julia | |
| uses: julia-actions/setup-julia@v2 | |
| with: | |
| version: ${{ steps.read_toml.outputs.value }} | |
| - name: Restore Julia packages | |
| uses: actions/cache/restore@v4 | |
| if: ${{ contains(runner.name, 'GitHub Actions') }} | |
| id: cache-julia | |
| with: | |
| path: | | |
| ~/.julia | |
| !~/.julia/registries | |
| key: ${{ runner.os }}-julia-${{ env.CACHE_NUM }}-${{ hashFiles('src/**', 'Project.toml', 'Manifest.toml') }} | |
| restore-keys: | | |
| ${{ runner.os }}-julia-${{ env.CACHE_NUM }}- | |
| - name: Install Julia packages | |
| if: ${{ !contains(runner.name, 'GitHub Actions') || steps.cache-julia.outputs.cache-hit != 'true' }} | |
| env: | |
| PYTHON: ${{ steps.setup-python.outputs.python-path }} | |
| shell: julia --color=yes {0} | |
| run: | | |
| using Pkg, Dates | |
| Pkg.add(["IJulia", "Literate", "PrettyTables", "JSON"]) | |
| Pkg.activate(".") | |
| Pkg.instantiate() | |
| Pkg.precompile() | |
| Pkg.gc(collect_delay=Day(0)) | |
| - name: Save Julia packages | |
| uses: actions/cache/save@v4 | |
| if: ${{ contains(runner.name, 'GitHub Actions') && steps.cache-julia.outputs.cache-hit != 'true' }} | |
| with: | |
| path: | | |
| ~/.julia | |
| !~/.julia/registries | |
| key: ${{ steps.cache-julia.outputs.cache-primary-key }} | |
| - name: Run notebooks | |
| run: julia --color=yes -p ${{ env.LITERATE_PROC }} --heap-size-hint=4G run.jl | |
| - name: Copy back built notebooks | |
| run: cp --verbose -rf ${{ env.NBCACHE }}/docs/* docs/ | |
| - name: Build website | |
| run: jupyter-book build docs/ | |
| - name: Upload pages artifact | |
| if: ${{ github.ref == 'refs/heads/main' }} | |
| uses: actions/upload-pages-artifact@v3 | |
| with: | |
| path: docs/_build/html/ | |
| # Deploy pages | |
| deploy: | |
| needs: CI | |
| if: ${{ github.ref == 'refs/heads/main' }} | |
| # Grant GITHUB_TOKEN the permissions required to make a Pages deployment | |
| permissions: | |
| pages: write # to deploy to Pages | |
| id-token: write # to verify the deployment originates from an appropriate source | |
| actions: read # to download an artifact uploaded by `actions/upload-pages-artifact@v3` | |
| environment: | |
| name: github-pages | |
| url: ${{ steps.deployment.outputs.page_url }} | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Deploy to GitHub Pages | |
| id: deployment | |
| uses: actions/deploy-pages@v4 |