Julia Dependency Update (#270)

Automated changes by [create-pull-request](https://github.com/peter-evans/create-pull-request) GitHub action
ntumitolab · Nov 6, 2023 · f26f546 · f26f546
1 parent 18c1fc3
commit f26f546
Showing 1 changed file with 41 additions and 43 deletions.
diff --git a/Manifest.toml b/Manifest.toml
@@ -167,9 +167,9 @@ version = "0.5.1"
 
 [[deps.Catalyst]]
 deps = ["DataStructures", "DiffEqBase", "DocStringExtensions", "Graphs", "JumpProcesses", "LaTeXStrings", "Latexify", "LinearAlgebra", "MacroTools", "ModelingToolkit", "Parameters", "Reexport", "Requires", "SparseArrays", "SymbolicUtils", "Symbolics", "Unitful"]
-git-tree-sha1 = "099b15b77b6ec346509078bf1f863d287b830822"
+git-tree-sha1 = "8e7e57c2ed4ecfb798f5a8cb230a9dd84765e7b1"
 uuid = "479239e8-5488-4da2-87a7-35f2df7eef83"
-version = "13.5.0"
+version = "13.5.1"
 
     [deps.Catalyst.extensions]
     CatalystHomotopyContinuationExtension = "HomotopyContinuation"
@@ -346,24 +346,25 @@ uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab"
 version = "1.9.1"
 
 [[deps.DiffEqBase]]
-deps = ["ArrayInterface", "ChainRulesCore", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces", "ZygoteRules"]
-git-tree-sha1 = "c8bc8487a7987c13576f25959ac11b25d5da84e2"
+deps = ["ArrayInterface", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces"]
+git-tree-sha1 = "de4709e30bd5490435122c4b415b90a812c23fbf"
 uuid = "2b5f629d-d688-5b77-993f-72d75c75574e"
-version = "6.136.0"
+version = "6.138.1"
 
     [deps.DiffEqBase.extensions]
+    DiffEqBaseChainRulesCoreExt = "ChainRulesCore"
     DiffEqBaseDistributionsExt = "Distributions"
-    DiffEqBaseEnzymeExt = "Enzyme"
+    DiffEqBaseEnzymeExt = ["ChainRulesCore", "Enzyme"]
     DiffEqBaseGeneralizedGeneratedExt = "GeneralizedGenerated"
     DiffEqBaseMPIExt = "MPI"
     DiffEqBaseMeasurementsExt = "Measurements"
     DiffEqBaseMonteCarloMeasurementsExt = "MonteCarloMeasurements"
     DiffEqBaseReverseDiffExt = "ReverseDiff"
     DiffEqBaseTrackerExt = "Tracker"
     DiffEqBaseUnitfulExt = "Unitful"
-    DiffEqBaseZygoteExt = "Zygote"
 
     [deps.DiffEqBase.weakdeps]
+    ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4"
     Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f"
     Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9"
     GeneralizedGenerated = "6b9d7cbe-bcb9-11e9-073f-15a7a543e2eb"
@@ -373,7 +374,6 @@ version = "6.136.0"
     ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267"
     Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c"
     Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d"
-    Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f"
 
 [[deps.DiffEqCallbacks]]
 deps = ["DataStructures", "DiffEqBase", "ForwardDiff", "Functors", "LinearAlgebra", "Markdown", "NLsolve", "Parameters", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"]
@@ -428,18 +428,20 @@ deps = ["Random", "Serialization", "Sockets"]
 uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b"
 
 [[deps.Distributions]]
-deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"]
-git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7"
+deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"]
+git-tree-sha1 = "a6c00f894f24460379cb7136633cef54ac9f6f4a"
 uuid = "31c24e10-a181-5473-b8eb-7969acd0382f"
-version = "0.25.102"
+version = "0.25.103"
 
     [deps.Distributions.extensions]
     DistributionsChainRulesCoreExt = "ChainRulesCore"
     DistributionsDensityInterfaceExt = "DensityInterface"
+    DistributionsTestExt = "Test"
 
     [deps.Distributions.weakdeps]
     ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4"
     DensityInterface = "b429d917-457f-4dbc-8f4c-0cc954292b1d"
+    Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
 
 [[deps.DocStringExtensions]]
 deps = ["LibGit2"]
@@ -517,10 +519,10 @@ uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a"
 version = "0.4.1"
 
 [[deps.FFMPEG_jll]]
-deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"]
-git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd"
+deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"]
+git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e"
 uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5"
-version = "4.4.2+2"
+version = "4.4.4+1"
 
 [[deps.FastBroadcast]]
 deps = ["ArrayInterface", "LinearAlgebra", "Polyester", "Static", "StaticArrayInterface", "StrideArraysCore"]
@@ -1008,9 +1010,9 @@ uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
 
 [[deps.LinearSolve]]
 deps = ["ArrayInterface", "ConcreteStructs", "DocStringExtensions", "EnumX", "EnzymeCore", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "Libdl", "LinearAlgebra", "MKL", "MKL_jll", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "SuiteSparse", "UnPack"]
-git-tree-sha1 = "371e4ece4fc1341f54531dde75ae7d0b19257c2c"
+git-tree-sha1 = "6573ca0e133d8db412d045faafc9705d22f94fe1"
 uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae"
-version = "2.15.0"
+version = "2.16.1"
 
     [deps.LinearSolve.extensions]
     LinearSolveBandedMatricesExt = "BandedMatrices"
@@ -1188,9 +1190,9 @@ version = "1.2.0"
 
 [[deps.NonlinearSolve]]
 deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "DiffEqBase", "EnumX", "FastBroadcast", "FiniteDiff", "ForwardDiff", "LineSearches", "LinearAlgebra", "LinearSolve", "PrecompileTools", "RecursiveArrayTools", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SparseArrays", "SparseDiffTools", "StaticArraysCore", "UnPack"]
-git-tree-sha1 = "613f5d5b911ab761cc7f41191c197ba3d9ca9d78"
+git-tree-sha1 = "6e7919a71af529fd58af4a7f5fd5a612f53f54a7"
 uuid = "8913a72c-1f9b-4ce2-8d82-65094dcecaec"
-version = "2.6.0"
+version = "2.7.0"
 
     [deps.NonlinearSolve.extensions]
     NonlinearSolveBandedMatricesExt = "BandedMatrices"
@@ -1232,9 +1234,9 @@ version = "1.4.1"
 
 [[deps.OpenSSL_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
-git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200"
+git-tree-sha1 = "cc6e1927ac521b659af340e0ca45828a3ffc748f"
 uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95"
-version = "1.1.23+0"
+version = "3.0.12+0"
 
 [[deps.OpenSpecFun_jll]]
 deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"]
@@ -1414,9 +1416,9 @@ uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7"
 
 [[deps.Qt6Base_jll]]
 deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"]
-git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336"
+git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b"
 uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56"
-version = "6.5.2+2"
+version = "6.5.3+1"
 
 [[deps.QuadGK]]
 deps = ["DataStructures", "LinearAlgebra"]
@@ -1559,19 +1561,21 @@ uuid = "476501e8-09a2-5ece-8869-fb82de89a1fa"
 version = "0.6.42"
 
 [[deps.SciMLBase]]
-deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"]
-git-tree-sha1 = "9e4c2902c2e8675c3b67eb24fd7f89defcbde9af"
+deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"]
+git-tree-sha1 = "8d1bb6b4c0aa7c1bcd3bcd81e2b8c3b4f4b0733e"
 uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462"
-version = "2.6.0"
+version = "2.7.3"
 
     [deps.SciMLBase.extensions]
+    SciMLBaseChainRulesCoreExt = "ChainRulesCore"
     SciMLBasePartialFunctionsExt = "PartialFunctions"
     SciMLBasePyCallExt = "PyCall"
     SciMLBasePythonCallExt = "PythonCall"
     SciMLBaseRCallExt = "RCall"
     SciMLBaseZygoteExt = "Zygote"
 
     [deps.SciMLBase.weakdeps]
+    ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4"
     PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b"
     PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0"
     PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d"
@@ -1586,9 +1590,9 @@ version = "0.1.9"
 
 [[deps.SciMLOperators]]
 deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"]
-git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b"
+git-tree-sha1 = "51ae235ff058a64815e0a2c34b1db7578a06813d"
 uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961"
-version = "0.3.6"
+version = "0.3.7"
 
 [[deps.Scratch]]
 deps = ["Dates"]
@@ -1598,9 +1602,9 @@ version = "1.2.1"
 
 [[deps.SentinelArrays]]
 deps = ["Dates", "Random"]
-git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39"
+git-tree-sha1 = "0e7508ff27ba32f26cd459474ca2ede1bc10991f"
 uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c"
-version = "1.4.0"
+version = "1.4.1"
 
 [[deps.Serialization]]
 uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b"
@@ -1628,9 +1632,9 @@ version = "1.1.0"
 
 [[deps.SimpleNonlinearSolve]]
 deps = ["ArrayInterface", "DiffEqBase", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "PackageExtensionCompat", "PrecompileTools", "Reexport", "SciMLBase", "StaticArraysCore"]
-git-tree-sha1 = "15ff97fa4881133caa324dacafe28b5ac47ad8a2"
+git-tree-sha1 = "37ee39f07e0258539005473bb30dc5f9c1236449"
 uuid = "727e6d20-b764-4bd8-a329-72de5adea6c7"
-version = "0.1.23"
+version = "0.1.24"
 
     [deps.SimpleNonlinearSolve.extensions]
     SimpleNonlinearSolveNNlibExt = "NNlib"
@@ -1670,9 +1674,9 @@ uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf"
 
 [[deps.SparseDiffTools]]
 deps = ["ADTypes", "Adapt", "ArrayInterface", "Compat", "DataStructures", "FiniteDiff", "ForwardDiff", "Graphs", "LinearAlgebra", "PackageExtensionCompat", "Random", "Reexport", "SciMLOperators", "Setfield", "SparseArrays", "StaticArrayInterface", "StaticArrays", "Tricks", "UnPack", "VertexSafeGraphs"]
-git-tree-sha1 = "bb0ff88a054f2dbf3d54d7630a42b743fcdfa21b"
+git-tree-sha1 = "e162b74fd1ce6d371ff5c584b53e34538edb9212"
 uuid = "47a9eef4-7e08-11e9-0b38-333d64bd3804"
-version = "2.9.2"
+version = "2.11.0"
 
     [deps.SparseDiffTools.extensions]
     SparseDiffToolsEnzymeExt = "Enzyme"
@@ -1771,9 +1775,9 @@ version = "1.16.1"
 
 [[deps.StochasticDiffEq]]
 deps = ["Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DiffEqNoiseProcess", "DocStringExtensions", "FillArrays", "FiniteDiff", "ForwardDiff", "JumpProcesses", "LevyArea", "LinearAlgebra", "Logging", "MuladdMacro", "NLsolve", "OrdinaryDiffEq", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SparseArrays", "SparseDiffTools", "StaticArrays", "UnPack"]
-git-tree-sha1 = "2a1818923476d496190791b4cf7183e9ccf64a99"
+git-tree-sha1 = "bc753f283fbd6a944a8b7b20784b7ea42ac03c1b"
 uuid = "789caeaf-c7a9-5a7d-9973-96adeb23e2a0"
-version = "6.63.0"
+version = "6.63.1"
 
 [[deps.StrideArraysCore]]
 deps = ["ArrayInterface", "CloseOpenIntervals", "IfElse", "LayoutPointers", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface", "ThreadingUtilities"]
@@ -1882,9 +1886,9 @@ uuid = "0796e94c-ce3b-5d07-9a54-7f471281c624"
 version = "0.5.25"
 
 [[deps.TranscodingStreams]]
-git-tree-sha1 = "49cbf7c74fafaed4c529d47d48c8f7da6a19eb75"
+git-tree-sha1 = "1fbeaaca45801b4ba17c251dd8603ef24801dd84"
 uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa"
-version = "0.10.1"
+version = "0.10.2"
 weakdeps = ["Random", "Test"]
 
     [deps.TranscodingStreams.extensions]
@@ -2187,12 +2191,6 @@ git-tree-sha1 = "49ce682769cd5de6c72dcf1b94ed7790cd08974c"
 uuid = "3161d3a3-bdf6-5164-811a-617609db77b4"
 version = "1.5.5+0"
 
-[[deps.ZygoteRules]]
-deps = ["ChainRulesCore", "MacroTools"]
-git-tree-sha1 = "9d749cd449fb448aeca4feee9a2f4186dbb5d184"
-uuid = "700de1a5-db45-46bc-99cf-38207098b444"
-version = "0.2.4"
-
 [[deps.eudev_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"]
 git-tree-sha1 = "431b678a28ebb559d224c0b6b6d01afce87c51ba"