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Update readme with bioRxiv citation; update version number 1.0.1
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gnarzisi committed Sep 30, 2017
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5 changes: 4 additions & 1 deletion README.md
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Expand Up @@ -4,7 +4,10 @@ lancet
Lancet is a somatic variant caller (SNVs and indels) for short read data. Lancet uses a localized micro-assembly strategy to detect somatic mutation with high sensitivity and accuracy on a tumor/normal pair.
Lancet is based on the colored de Bruijn graph assembly paradigm where tumor and normal reads are jointly analyzed within the same graph. On-the-fly repeat composition analysis and self-tuning k-mer strategy are used together to increase specificity in regions characterized by low complexity sequences. Lancet requires the raw reads to be aligned with BWA (See [BWA](http://bio-bwa.sourceforge.net/bwa.shtml) description for more info). Lancet is implemented in C++.

* Version: 1.0.0

Narzisi G, Corvelo A, Arora K, Bergmann E, Shah M, Musunuri R, Emde AK, Robine N, Vacic V, Zody MC. *Lancet: genome-wide somatic variant calling using localized colored DeBruijn graphs.* (2017) bioRxiv 196311; doi: [https://doi.org/10.1101/196311](https://doi.org/10.1101/196311)

* Version: 1.0.1
* Author: Giuseppe Narzisi, [New York Genome Center](https://www.nygenome.org)

Lancet is freely available for academic and non-commercial research purposes ([`LICENSE.txt`](https://github.com/nygenome/lancet/blob/master/LICENSE.txt)).
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2 changes: 1 addition & 1 deletion src/Lancet.hh
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#include "Microassembler.hh"

string VERSION = "1.0.0 (beta), September 18 2016";
string VERSION = "1.0.1 (beta), September 30 2017";

/**** configuration parameters ****/
int NUM_THREADS = 1;
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