fixed minor bug in Makefile that caused -lbamtools to not be found

nygenome · Feb 9, 2018 · f6f8e1f · f6f8e1f
1 parent 85c8320
commit f6f8e1f
Showing 1 changed file with 1 addition and 3 deletions.
diff --git a/src/Makefile b/src/Makefile
@@ -1,15 +1,13 @@
 BAMTOOLS_DIR := ../bamtools-2.3.0/
 HTSLIB_DIR := ../htslib-1.3/
-SPARSEPP_DIR := ../sparsepp/
 
 ABS_BAMTOOLS_DIR := $(realpath $(BAMTOOLS_DIR))
 ABS_HTSLIB_DIR := $(realpath $(HTSLIB_DIR))
-ABS_SPARSEPP_DIR := $(realpath $(SPARSEPP_DIR))
 
 CXX := g++
 CXXFLAGS := -std=c++0x -Wno-deprecated -Wall -O3 -fexceptions -g -Wl,-rpath,$(ABS_BAMTOOLS_DIR)/lib/
 #CXXFLAGS := -std=c++0x -Wno-deprecated -Wall -O3 -fexceptions -pg -Wl,-rpath,$(ABS_BAMTOOLS_DIR)/lib/ # compile for gprof
-INCLUDES := -I$(ABS_BAMTOOLS_DIR)/include/ -I$(ABS_HTSLIB_DIR)/ -I$(ABS_SPARSEPP_DIR) -L$(ABS_BAMTOOLS_DIR)/lib/ -L$(ABS_HTSLIB_DIR)/ -L$(ABS_SPARSEPP_DIR)
+INCLUDES := -I$(ABS_BAMTOOLS_DIR)/include/ -I$(ABS_HTSLIB_DIR)/ -L$(ABS_BAMTOOLS_DIR)/lib/ -L$(ABS_HTSLIB_DIR)/
 
 all: lancet