GitLab -> GitHub

.github/workflows/docs.yml

@@ -0,0 +1,68 @@
+name: Deploy documentation
+
+on:
+  # Runs on pushes targeting the default branch
+  push:
+    branches: ["main"]
+
+  # Allows you to run this workflow manually from the Actions tab
+  workflow_dispatch:
+
+# Sets permissions of the GITHUB_TOKEN to allow deployment to GitHub Pages
+permissions:
+  contents: read
+  pages: write
+  id-token: write
+
+# Allow one concurrent deployment
+concurrency:
+  group: "pages"
+  cancel-in-progress: true
+
+jobs:
+  deploy:
+    name: docs
+    environment:
+      name: github-pages
+      url: ${{ steps.deployment.outputs.page_url }}
+    runs-on: ubuntu-latest
+
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v4
+        with:
+          fetch-depth: 0
+
+      - name: Install miniconda
+        uses: conda-incubator/setup-miniconda@v3
+        with:
+          miniconda-version: "latest"
+          auto-update-conda: true
+          python-version: "3.12"
+
+      - name: Initialize conda environment
+        run: make conda-create
+
+      - name: Setup conda
+        run: make conda-setup
+
+      - name: Install conda dependencies
+        run: make from-conda-lock
+
+      - name: Install docs dependenices
+        run: make install
+
+      - name: Build documentation
+        run: make docs
+
+      - name: Setup Pages
+        uses: actions/configure-pages@v5
+
+      - name: Upload artifact
+        uses: actions/upload-pages-artifact@v3
+        with:
+          path: 'public/'
+
+      - name: Deploy to GitHub Pages
+        id: deployment
+        uses: actions/deploy-pages@v4

README.md

@@ -22,12 +22,12 @@ git push --follow-tags
 
 ## License
 
-Code contained in this project is released under the [MIT License](https://spdx.org/licenses/MIT.html) as specified in [`LICENSE_CODE`](https://gitlab.com/oasci/breadcrumbs/compbio/-/blob/main/LICENSE_CODE.md).
-This license grants you the freedom to use, modify, and distribute it as long as you include the original copyright notice contained in [`LICENSE_CODE`](https://gitlab.com/oasci/breadcrumbs/compbio/-/blob/main/LICENSE_CODE.md) and the following notice.
+Code contained in this project is released under the [MIT License](https://spdx.org/licenses/MIT.html) as specified in [`LICENSE_CODE`](https://github.com/oasci-bc/compbio/blob/main/LICENSE_CODE.md).
+This license grants you the freedom to use, modify, and distribute it as long as you include the original copyright notice contained in [`LICENSE_CODE`](https://github.com/oasci-bc/compbio/blob/main/LICENSE_CODE.md) and the following notice.
 
-> Portions of this code were incorporated and adapted with permission from [Computational Biology Breadcrumbs](https://gitlab.com/oasci/compbio) by OASCI licensed under the [MIT license](https://gitlab.com/oasci/breadcrumbs/compbio/-/blob/main/LICENSE_CODE.md).
+> Portions of this code were incorporated and adapted with permission from [Computational Biology Breadcrumbs](https://gitlab.com/oasci/compbio) by OASCI licensed under the [MIT license](https://github.com/oasci-bc/compbio/blob/main/LICENSE_CODE.md).
 
-All other data, information, documentation, and associated content provided within this project are released under the [Creative Commons Attribution-ShareAlike 4.0 International License (CC BY-SA 4.0)](https://creativecommons.org/licenses/by-sa/4.0/) as specified in [`LICENSE_INFO`](https://gitlab.com/oasci/breadcrumbs/compbio/-/blob/main/LICENSE_INFO.md).
+All other data, information, documentation, and associated content provided within this project are released under the [Creative Commons Attribution-ShareAlike 4.0 International License (CC BY-SA 4.0)](https://creativecommons.org/licenses/by-sa/4.0/) as specified in [`LICENSE_INFO`](https://github.com/oasci-bc/compbio/blob/main/LICENSE_INFO.md).
 This means you are free to share and adapt the non-code elements, but you must give appropriate credit to the original source and indicate if changes were made.
 
-> Some content was incorporated and adapted with permission [Computational Biology Breadcrumbs](https://gitlab.com/oasci/compbio) by OASCI licensed under the [CC BY-SA 4.0 license](https://gitlab.com/oasci/breadcrumbs/compbio/-/blob/main/LICENSE_INFO.md)
+> Some content was incorporated and adapted with permission [Computational Biology Breadcrumbs](https://gitlab.com/oasci/compbio) by OASCI licensed under the [CC BY-SA 4.0 license](https://github.com/oasci-bc/compbio/blob/main/LICENSE_INFO.md)

mkdocs.yml

@@ -3,9 +3,8 @@ docs_dir: docs
 site_name: Computational Biology - Breadcrumbs
 site_author: OASCI
 
-repo_name: oasci/breadcrumbs/python-bc
-repo_url: https://gitlab.com/oasci/breadcrumbs/python-bc
-edit_uri: -/edit/main/python-bc
+repo_name: oasci/compbio
+repo_url: https://github.com/oasci-bc/compbio
 copyright: <a href="https://creativecommons.org/licenses/by-nc-sa/4.0/">CC BY-NC-SA 4.0</a> by OASCI
 
 # https://squidfunk.github.io/mkdocs-material/
@@ -29,7 +28,7 @@ theme:
     text: Roboto
     code: Roboto Mono
   icon:
-    repo: fontawesome/brands/gitlab
+    repo: fontawesome/brands/github
     annotation: material/star-four-points-circle
   features:
     - content.code.annotate