Fix bug with last numpy and integer management #15
Workflow file for this run
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| name: CI tests | |
| # CI tests ran every time new code is pushed to the repo | |
| on: | |
| push: | |
| branches: | |
| - master | |
| pull_request: | |
| branches-ignore: | |
| - 'dependabot*' | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| detect-ci-trigger: | |
| name: detect ci trigger | |
| runs-on: ubuntu-latest | |
| if: | | |
| github.repository == 'obidam/pyxpcm' | |
| && (github.event_name == 'push' || github.event_name == 'pull_request') | |
| outputs: | |
| triggered: ${{ steps.detect-trigger.outputs.trigger-found }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 2 | |
| - uses: xarray-contrib/[email protected] | |
| id: detect-trigger | |
| with: | |
| keyword: "[skip-ci]" | |
| scikit: | |
| # CI tests for environments with requirements in pinned versions, using Scikit-learn backend | |
| # All commits must pass this | |
| name: Scikit-Learn - Pinned - Py${{matrix.python-version}} - ${{ matrix.os }} | |
| needs: detect-ci-trigger | |
| runs-on: ${{ matrix.os }} | |
| if: needs.detect-ci-trigger.outputs.triggered == 'false' | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| continue-on-error: ${{ matrix.experimental }} | |
| strategy: | |
| max-parallel: 12 | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.8"] | |
| os: ["ubuntu-latest", "macos-latest"] | |
| experimental: [false] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set environment variables | |
| run: | | |
| echo "CONDA_ENV_FILE=ci/requirements/py${{matrix.python-version}}-all-pinned-scikitlearn.yml" >> $GITHUB_ENV | |
| echo "PYTHON_VERSION=${{ matrix.python-version }}" >> $GITHUB_ENV | |
| - name: Setup micromamba | |
| uses: mamba-org/provision-with-micromamba@v15 | |
| with: | |
| environment-file: ${{ env.CONDA_ENV_FILE }} | |
| environment-name: pyxpcm-tests | |
| cache-env: true | |
| cache-env-key: "${{runner.os}}-${{runner.arch}}-py${{matrix.python-version}}-${{env.TODAY}}-${{hashFiles(env.CONDA_ENV_FILE)}}" | |
| extra-specs: | | |
| python=${{matrix.python-version}} | |
| conda | |
| # We only want to install this on one run, because otherwise we'll have | |
| # duplicate annotations. | |
| - name: Install error reporter | |
| if: ${{ matrix.os }} == 'ubuntu-latest' and ${{ matrix.python-version }} == '3.8' | |
| run: | | |
| python -m pip install pytest-github-actions-annotate-failures | |
| - name: Version info | |
| run: | | |
| conda info | |
| conda list | |
| # - name: Lint with flake8 | |
| # run: | | |
| # flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
| - name: Test with pytest | |
| run: | | |
| pytest -ra -v -s --durations=10 --cov=./ --cov-config=.coveragerc --cov-report xml:cov.xml --cov-report term-missing | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| file: ./cov.xml | |
| flags: unittests | |
| name: codecov-github | |
| fail_ci_if_error: false | |
| env_vars: RUNNER_OS,PYTHON_VERSION | |
| daskml: | |
| # CI tests for environments with requirements in pinned versions, using Dask-ML backend | |
| # All commits must pass this | |
| name: Dask-ML - Pinned - Py${{matrix.python-version}} - ${{ matrix.os }} | |
| needs: detect-ci-trigger | |
| runs-on: ${{ matrix.os }} | |
| if: needs.detect-ci-trigger.outputs.triggered == 'false' | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| continue-on-error: ${{ matrix.experimental }} | |
| strategy: | |
| max-parallel: 12 | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.8"] | |
| os: ["ubuntu-latest", "macos-latest"] | |
| experimental: [true] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set environment variables | |
| run: | | |
| echo "CONDA_ENV_FILE=ci/requirements/py${{matrix.python-version}}-all-pinned-daskml.yml" >> $GITHUB_ENV | |
| echo "PYTHON_VERSION=${{ matrix.python-version }}" >> $GITHUB_ENV | |
| - name: Setup micromamba | |
| uses: mamba-org/provision-with-micromamba@v15 | |
| with: | |
| environment-file: ${{ env.CONDA_ENV_FILE }} | |
| environment-name: pyxpcm-tests | |
| cache-env: true | |
| cache-env-key: "${{runner.os}}-${{runner.arch}}-py${{matrix.python-version}}-${{env.TODAY}}-${{hashFiles(env.CONDA_ENV_FILE)}}" | |
| extra-specs: | | |
| python=${{matrix.python-version}} | |
| conda | |
| - name: Version info | |
| run: | | |
| conda info | |
| conda list | |
| # - name: Lint with flake8 | |
| # run: | | |
| # flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
| - name: Test with pytest | |
| run: | | |
| pytest -ra -v -s --durations=10 --cov=./ --cov-config=.coveragerc --cov-report xml:cov.xml --cov-report term-missing | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| file: ./cov.xml | |
| flags: unittests | |
| name: codecov-github | |
| fail_ci_if_error: false | |
| env_vars: RUNNER_OS,PYTHON_VERSION |