Fixes #2822 textual&logical defs- trophectodermal cell

[Caroline-99]

Fixes #2822

• Added a textual defs and references
• Improved logical defs

[Caroline-99]

#gogoeditdiff

[github-actions]

Here's a diff of how these changes impact the classified ontology (on -base file):

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/cl/cl-base.owl
• Version IRI: http://purl.obolibrary.org/obo/cl/releases/2025-01-09/cl-base.owl
• Loaded from: file:/__w/cell-ontology/cell-ontology/src/ontology/cl-base-master.owl/cl-base.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/cl/cl-base.owl
• Version IRI: http://purl.obolibrary.org/obo/cl/releases/2025-01-09/cl-base.owl
• Loaded from: file:/__w/cell-ontology/cell-ontology/src/ontology/cl-base-pr.owl/cl-base.owl

Ontology imports

Ontology annotations

UBERON_0004345 http://purl.obolibrary.org/obo/UBERON_0004345

Added

• Class: UBERON_0004345

trophectodermal cell http://purl.obolibrary.org/obo/CL_1000274

Added

• trophectodermal cell IAO_0000115 "An extraembryonic cell that is part of the trophectoderm, representing the first lineage to differentiate in the embryo. This cell is crucial for implantation into the uterine wall and differentiates into trophoblast cells, which contribute to placenta formation and facilitate maternal-fetal nutrient and signal exchange."

  • hasDbXref "PMID:22918806"

• trophectodermal cell EquivalentTo extraembryonic cell and (BFO_0000050 some UBERON_0004345)

• trophectodermal cell SubClassOf RO_0002203 some trophoblast cell

• trophectodermal cell SubClassOf BFO_0000050 some UBERON_0004345

[github-actions]

Here's a diff of your edit file (unreasoned)

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/cl.owl
• Version IRI: None
• Loaded from: file:/__w/cell-ontology/cell-ontology/master/src/ontology/cl-edit.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/cl.owl
• Version IRI: None
• Loaded from: file:/__w/cell-ontology/cell-ontology/branch/src/ontology/cl-edit.owl

Ontology imports

Ontology annotations

trophectodermal cell http://purl.obolibrary.org/obo/CL_1000274

Removed

• trophectodermal cell SubClassOf extraembryonic cell

Added

• trophectodermal cell definition "An extraembryonic cell that is part of the trophectoderm, representing the first lineage to differentiate in the embryo. This cell is crucial for implantation into the uterine wall and differentiates into trophoblast cells, which contribute to placenta formation and facilitate maternal-fetal nutrient and signal exchange."

  • database_cross_reference "PMID:22918806"

• trophectodermal cell EquivalentTo extraembryonic cell and (part of some trophectoderm)

• trophectodermal cell SubClassOf develops into some trophoblast cell

[JABelfiore]

Looks good!