V05 dev2

[will-moore]

This updates the validator to support v0.5-dev2 data, as specified at ome/ngff#242.

Validating against image schema at https://raw.githubusercontent.com/normanrz/ngff/spec-rfc2/latest/schemas/image.schema and also loading version schema from https://raw.githubusercontent.com/normanrz/ngff/spec-rfc2/latest/schemas/version.schema

Preview build viewing sample data:
https://deploy-preview-36--ome-ngff-validator.netlify.app/?source=https://uk1s3.embassy.ebi.ac.uk/idr/share/ome2024-ngff-challenge/idr0044/4007801.zarr

cc @normanrz

TODO:

• Handle Well - e.g. https://deploy-preview-36--ome-ngff-validator.netlify.app/?source=https://uk1s3.embassy.ebi.ac.uk/bia-integrator-data/S-BIAD885/0046b0d0-f20b-4482-84b1-4b2b154865fd/0046b0d0-f20b-4482-84b1-4b2b154865fd.zarr/A/1/
• Handle bioformats2raw for 0.5 data, e.g. https://deploy-preview-36--ome-ngff-validator.netlify.app/?source=https://uk1s3.embassy.ebi.ac.uk/idr/share/ome2024-ngff-challenge/idr0054/Tonsil%203.zarr
• All Wells: https://deploy-preview-36--ome-ngff-validator.netlify.app/?source=https%3A%2F%2Fuk1s3.embassy.ebi.ac.uk%2Fidr%2Fshare%2Fome2024-ngff-challenge%2Fidr0090%2F190621.zarr&well=all
• Handle OME/ series for bf2raw. e.g. https://deploy-preview-36--ome-ngff-validator.netlify.app/?source=https://radosgw.public.os.wwu.de/n4bi-goe/Platynereis-H2B-TL.ome.zarr/

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[joshmoore]

@will-moore @manzt: I've also hard-coded the URL for hms-dbmi/vizarr#172 here as well 👍

[joshmoore]

When using ome_zarr view idr0001-2551.zarr

When using .../idr0001-2551.zarr $ http-server --cors

[joshmoore]

👍 from my side on the additional column:

[will-moore]

@joshmoore Not exactly sure what you're doing there....

$ ls plates/
2783928.zarr	4403.zarr	51.zarr
$ http-server --cors

https://deploy-preview-36--ome-ngff-validator.netlify.app/?source=http://127.0.0.1:8080/plates/4403.zarr
Looks good.

Also e.g.

$ $ http-server plates --cors

Works at https://deploy-preview-36--ome-ngff-validator.netlify.app/?source=http://127.0.0.1:8080/4403.zarr
etc.

[joshmoore]

Sorry, I just wanted to get a screenshot in place. No complaints 😄

[will-moore]

Last commit handles series metadata as in https://deploy-preview-36--ome-ngff-validator.netlify.app/?source=https://radosgw.public.os.wwu.de/n4bi-goe/Platynereis-H2B-TL.ome.zarr/

[jburel]

url should probably declare in a config file. Not a blocker

[will-moore]

Checked with a bunch of various samples from https://idr.github.io/ome-ngff-samples/ - All looking good.
@jburel OK to go ahead and merge?

[will-moore]

Fix pushed. Build is green. Merging...