Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Update CHANGES.md #411

Closed
wants to merge 1 commit into from
Closed
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
20 changes: 10 additions & 10 deletions CHANGES.md
Original file line number Diff line number Diff line change
Expand Up @@ -12,7 +12,7 @@
### Bug fixes

Several fixes from @robomics
* Improve handling of uint attributes
* Improve handling of unit attributes
* Fix incorrect variance stored by _balance_cisonly
* cload.py: fix detection of pandas v2.*.* causing IOHandles error

Expand Down Expand Up @@ -43,11 +43,11 @@ Date 2023-01-18

### Maintenance

* Dropped Python 2 support.
* Dropped Python `2` support.
* Removed deprecated `io` module.
* Deprecated `tools` module; renamed `parallel`.
* Various dependency maintenance upgrades.
* Modernized CI and dev tools.
* Modernized CI and Dev tools.
* Migrated to pyproject.toml and modernized packaging infra.

## [v0.8.11](https://github.com/open2c/cooler/compare/v0.8.10...v0.8.11)
Expand Down Expand Up @@ -79,10 +79,10 @@ Date : 2020-07-17
Date : 2020-06-23

### Maintenance
* Improved code coverage
* Added missing autodoc for cooler balance
* Dropped pysam and biopython as hard dependencies
* Officially sunsetting Python 2.7 support
* Increased code coverage for improved testing.
* Added autodocumentation for cooler balance functionality.
* Removed unnecessary dependencies (pysam & biopython).
* Officially ended Python 2.7 support (consider migration guide for transition).

### Enhancements
* Added zoom progressions (#203)
Expand All @@ -97,7 +97,7 @@ Date: 2020-01-12

### Maintenance
* Code styling with black
* Add coverage reporting
* Add coverage for reporting

### Bug fixes
* Replace `json` with `simplejson` to deal with attrs stored as bytes
Expand All @@ -111,7 +111,7 @@ Date: 2019-08-12
* Added contributing guidelines

### Bug fixes
* Fixed a related regression that affected selection of the `chrom` column.
* Fixed a related regression that affected selection of the `chrome` column.

Post-release `v0.8.6.post0`: requirements files added to MANIFEST.in

Expand Down Expand Up @@ -254,7 +254,7 @@ Date: 2018-05-07
Date: 2018-03-30

* Indexed pairs loading commands now provide option for 0- or 1-based positions (1-based by default). #115
* Fixed error introduced into cload pairix in last release.
* Fixed error introduced into the cload pairix in last release.


## [v0.7.8](https://github.com/open2c/cooler/compare/v0.7.7...v0.7.8)
Expand Down