Extend cell cycle conservation support for zebrafish and C. elegans (… #100

Extend cell cycle conservation support for zebrafish and C. elegans (…

Extend cell cycle conservation support for zebrafish and C. elegans (… #100

Summary
Jobs
- List components to test
  
  Test (embed_cell_types_jittered, control_methods, src/control_methods/embed_cell_types_jittered/c...
  
  Test (embed_cell_types, control_methods, src/control_methods/embed_cell_types/config.vsh.yaml, sr...
  
  Test (no_integration, control_methods, src/control_methods/no_integration/config.vsh.yaml, src/co...
  
  Test (shuffle_integration_by_batch, control_methods, src/control_methods/shuffle_integration_by_b...
  
  Test (shuffle_integration, control_methods, src/control_methods/shuffle_integration/config.vsh.ya...
  
  Test (shuffle_integration_by_cell_type, control_methods, src/control_methods/shuffle_integration_...
  
  Test (no_integration_batch, control_methods, src/control_methods/no_integration_batch/config.vsh....
  
  Test (isolated_label_asw, metrics, src/metrics/isolated_label_asw/config.vsh.yaml, src/metrics/is...
  
  Test (isolated_label_f1, metrics, src/metrics/isolated_label_f1/config.vsh.yaml, src/metrics/isol...
  
  Test (clustering_overlap, metrics, src/metrics/clustering_overlap/config.vsh.yaml, src/metrics/cl...
  
  Test (asw_batch, metrics, src/metrics/asw_batch/config.vsh.yaml, src/metrics/asw_batch/, python_s...
  
  Test (graph_connectivity, metrics, src/metrics/graph_connectivity/config.vsh.yaml, src/metrics/gr...
  
  Test (kbet, metrics, src/metrics/kbet/config.vsh.yaml, src/metrics/kbet/, python_script, metrics/...
  
  Test (pcr, metrics, src/metrics/pcr/config.vsh.yaml, src/metrics/pcr/, python_script, metrics/pcr)
  
  Test (cell_cycle_conservation, metrics, src/metrics/cell_cycle_conservation/config.vsh.yaml, src/...
  
  Test (hvg_overlap, metrics, src/metrics/hvg_overlap/config.vsh.yaml, src/metrics/hvg_overlap/, py...
  
  Test (asw_label, metrics, src/metrics/asw_label/config.vsh.yaml, src/metrics/asw_label/, python_s...
  
  Test (lisi, metrics, src/metrics/lisi/config.vsh.yaml, src/metrics/lisi/, python_script, metrics/...
  
  Test (transform, data_processors, src/data_processors/transform/config.vsh.yaml, src/data_process...
  
  Test (precompute_clustering_run, data_processors, src/data_processors/precompute_clustering_run/c...
  
  Test (precompute_clustering_merge, data_processors, src/data_processors/precompute_clustering_mer...
  
  Test (process_dataset, data_processors, src/data_processors/process_dataset/config.vsh.yaml, src/...
  
  Test (scgpt, methods, src/methods/scgpt/config.vsh.yaml, src/methods/scgpt/, python_script, metho...
  
  Test (scanvi, methods, src/methods/scanvi/config.vsh.yaml, src/methods/scanvi/, python_script, me...
  
  Test (batchelor_fastmnn, methods, src/methods/batchelor_fastmnn/config.vsh.yaml, src/methods/batc...
  
  Test (mnnpy, methods, src/methods/mnnpy/config.vsh.yaml, src/methods/mnnpy/, python_script, metho...
  
  Test (scalex, methods, src/methods/scalex/config.vsh.yaml, src/methods/scalex/, python_script, me...
  
  Test (uce, methods, src/methods/uce/config.vsh.yaml, src/methods/uce/, python_script, methods/uce)
  
  Test (scprint, methods, src/methods/scprint/config.vsh.yaml, src/methods/scprint/, python_script,...
  
  Test (harmonypy, methods, src/methods/harmonypy/config.vsh.yaml, src/methods/harmonypy/, python_s...
  
  Test (liger, methods, src/methods/liger/config.vsh.yaml, src/methods/liger/, r_script, methods/li...
  
  Test (batchelor_mnn_correct, methods, src/methods/batchelor_mnn_correct/config.vsh.yaml, src/meth...
  
  Test (scimilarity, methods, src/methods/scimilarity/config.vsh.yaml, src/methods/scimilarity/, py...
  
  Test (pyliger, methods, src/methods/pyliger/config.vsh.yaml, src/methods/pyliger/, python_script,...
  
  Test (bbknn, methods, src/methods/bbknn/config.vsh.yaml, src/methods/bbknn/, python_script, metho...
  
  Test (scvi, methods, src/methods/scvi/config.vsh.yaml, src/methods/scvi/, python_script, methods/...
  
  Test (combat, methods, src/methods/combat/config.vsh.yaml, src/methods/combat/, python_script, me...
  
  Test (geneformer, methods, src/methods/geneformer/config.vsh.yaml, src/methods/geneformer/, pytho...
  
  Test (scanorama, methods, src/methods/scanorama/config.vsh.yaml, src/methods/scanorama/, python_s...
  
  Test (harmony, methods, src/methods/harmony/config.vsh.yaml, src/methods/harmony/, r_script, meth...
Run details
- Usage
- Workflow file

Usage Workflow file

Annotations

1 warning

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

test / Test (cell_cycle_conservation, metrics, src/metrics/cell_cycle_conservation/config.vsh.yaml, src/...

succeeded Jan 11, 2025 in 1m 19s

Provide feedback

Saved searches

Use saved searches to filter your results more quickly

Extend cell cycle conservation support for zebrafish and C. elegans (… #100

test / Test (cell_cycle_conservation, metrics, src/metrics/cell_cycle_conservation/config.vsh.yaml, src/...

Extend cell cycle conservation support for zebrafish and C. elegans (… #100

Jobs

Run details

Annotations

test / Test (cell_cycle_conservation, metrics, src/metrics/cell_cycle_conservation/config.vsh.yaml, src/...

Re-running jobs...