Extend cell cycle conservation support for zebrafish and C. elegans #22
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rcannood
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Jan 10, 2025
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| ## Debugging nf-tower runs | ||
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| The actual benchmark is run on the [nf-tower platform](https://cloud.seqera.io/orgs/openproblems-bio/workspaces/openproblems-bio/watch). | ||
| You can find runs related to the batch integration by filtering for `label:task_batch_integration`, selecting a specific run and browsing the outputs. | ||
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| For debugging purposes, you can download the output of a task run from nf-tower following command: | ||
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| ```bash | ||
| common/scripts/fetch_task_run \ | ||
| --input s3://openproblems-work/work/<process ID>\ | ||
| --output temp_output | ||
| ``` | ||
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| You can find the process ID under the "Work directory" section of the Task details. |
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Nice! We should port this info to openproblems-bio/docs too! -- added github issue :P
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Merging it so I can try running it :) |
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Describe your changes
Adding support for zebrafish and C. elegans, main changes under scib: theislab/scib#421
Checklist before requesting a review
I have performed a self-review of my code
Check the correct box. Does this PR contain:
Proposed changes are described in the CHANGELOG.md
CI Tests succeed and look good!