chore: set safer bash config #1566
Workflow file for this run
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| name: Tests | |
| on: | |
| pull_request: | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| PRIVATE_REPO_ACCESS_TOKEN: ${{ secrets.ACTIONS_PRIVATE_REPO_RO_TOKEN }} | |
| STATA_LICENSE: ${{ secrets.STATA_LICENSE }} | |
| jobs: | |
| check: | |
| runs-on: ubuntu-20.04 | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: "actions/setup-python@v4" | |
| with: | |
| python-version: "3.8" | |
| cache: "pip" | |
| cache-dependency-path: requirements.*.txt | |
| - uses: extractions/setup-just@69d82fb0233557aec017ef13706851d0694e0f1d | |
| - name: Check formatting, linting and import sorting | |
| run: just check | |
| test-job: | |
| strategy: | |
| matrix: | |
| os: [ubuntu-20.04, windows-2019, macos-12] | |
| # Python 3.8 is what we currently support for running cohortextractor | |
| # locally, and 3.9 is what we required for databuilder so we need to make | |
| # sure we can run with those | |
| python: [3.8, 3.9] | |
| runs-on: ${{ matrix.os }} | |
| name: Run test suite | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| with: | |
| persist-credentials: false | |
| - name: Set up Python ${{ matrix.python }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python }} | |
| cache: "pip" | |
| cache-dependency-path: requirements.*.txt | |
| - name: Set up default Python 3.8 for MacOS | |
| if: ${{ matrix.os == 'macos-12' && matrix.python != '3.8' }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: 3.8 | |
| cache: "pip" | |
| cache-dependency-path: requirements.*.txt | |
| - name: install Docker/Colima on MacOS | |
| if: ${{ matrix.os == 'macos-12' }} | |
| run: brew install docker | |
| - name: start Colima on MacOS | |
| if: ${{ matrix.os == 'macos-12' }} | |
| run: colima start | |
| - uses: extractions/setup-just@69d82fb0233557aec017ef13706851d0694e0f1d | |
| - name: Run actual tests on ${{ matrix.os }} | |
| if: ${{ matrix.os == 'ubuntu-20.04' }} | |
| run: just test -vvv | |
| - name: Run actual tests on ${{ matrix.os }} | |
| if: ${{ matrix.os == 'windows-2019' || matrix.os == 'macos-12' }} | |
| run: just test-no-docker -vvv | |
| test-package-build: | |
| runs-on: ubuntu-20.04 | |
| name: Test we can build PyPI package | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: Set up Python 3.8 | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: 3.8 | |
| cache: "pip" | |
| cache-dependency-path: requirements.*.txt | |
| # We need to set this to a valid version string in order to keep pip happy, | |
| # but it doesn't really matter what version we use | |
| - name: Set version | |
| run: echo '1.0' > VERSION | |
| - uses: extractions/setup-just@69d82fb0233557aec017ef13706851d0694e0f1d | |
| - name: Check the wheel installs and runs | |
| run: just package-test wheel | |
| - name: Check the sdist installs and runs | |
| run: just package-test sdist | |
| test-docker: | |
| runs-on: ubuntu-20.04 | |
| name: Test docker image | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| with: | |
| persist-credentials: false | |
| - name: Set up Just | |
| uses: extractions/setup-just@69d82fb0233557aec017ef13706851d0694e0f1d | |
| - name: Build image | |
| run: just docker/build | |
| - name: Run tests in docker-image | |
| run: just docker/test | |
| test-github-workflow-output: | |
| runs-on: ubuntu-20.04 | |
| name: Inspect test runner output in the context of a Github Workflow | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| - name: Set up Python 3.8 | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: 3.8 | |
| cache: "pip" | |
| cache-dependency-path: requirements.*.txt | |
| - uses: extractions/setup-just@69d82fb0233557aec017ef13706851d0694e0f1d | |
| - name: Install dependencies | |
| run: just devenv | |
| - name: Run equivalent command used by test runner | |
| # We don't care if this command succeeds or not, we just want to be able | |
| # to look at the output | |
| run: | | |
| python -m jobrunner.local_run run_all \ | |
| --project-dir=tests/fixtures/full_project \ | |
| --continue-on-error --timestamps --format-output-for-github \ | |
| || true |