Merge pull request #206 from opentargets/vh-3405

feat: added variantId to pydantic_models/pharmacogenomics.py and upda…
opentargets · Aug 8, 2024 · c925389 · c925389
2 parents 3d6391f + 5be48ce
commit c925389
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diff --git a/pydantic_models/pharmacogenomics.py b/pydantic_models/pharmacogenomics.py
@@ -78,6 +78,15 @@ class Pharmacogenomics(BaseModel):
         ],
         regex=r"^[0-9YX]{1,2}_\d+_[GATC]+_([GATC]+,)?[GATC]+$",
     )
+    variantId: Optional[str] = Field(
+        description="Identifier in chr_pos_ref_alt notation of the disease-causing variant",
+        examples=[
+            "19_38499645_GGAG_G",
+            "20_54156202_T_C",
+            "X_12885540_A_A"
+        ],
+        regex=r"^[0-9YX]{1,2}_\d+_[GATC]+_[GATC]+$",
+    )
     variantRsId: Optional[str] = Field(
         description="RS identifier of the variant.",
         examples=["rs12354"],

diff --git a/schemas/pharmacogenomics.json b/schemas/pharmacogenomics.json
@@ -76,6 +76,17 @@
       ],
       "type": "string"
     },
+    "variantId": {
+      "title": "Variantid",
+      "description": "Identifier in chr_pos_ref_alt notation of the disease-causing variant",
+      "pattern": "^[0-9YX]{1,2}_\\d+_[GATC]+_[GATC]+$",
+      "examples": [
+        "19_38499645_GGAG_G",
+        "20_54156202_T_C",
+        "X_12885540_A_A"
+      ],
+      "type": "string"
+    },
     "variantRsId": {
       "title": "Variantrsid",
       "description": "RS identifier of the variant.",