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@openvax

OpenVax

Open source software for personalized cancer vaccines

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  1. pyensembl pyensembl Public

    Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl

    Python 383 67

  2. varcode varcode Public

    Library for manipulating genomic variants and predicting their effects

    Python 81 24

  3. mhcflurry mhcflurry Public

    Peptide-MHC I binding affinity prediction

    Python 194 58

  4. vaxrank vaxrank Public

    Ranked vaccine peptides for personalized cancer immunotherapy

    Python 55 23

  5. mhctools mhctools Public

    Python interface to running command-line and web-based MHC binding predictors

    Python 89 22

  6. neoantigen-vaccine-pipeline neoantigen-vaccine-pipeline Public

    Bioinformatics pipeline for selecting patient-specific cancer neoantigen vaccines

    Python 76 25

Repositories

Showing 10 of 44 repositories
  • mhcflurry Public

    Peptide-MHC I binding affinity prediction

    openvax/mhcflurry’s past year of commit activity
    Python 194 Apache-2.0 58 8 0 Updated Nov 18, 2024
  • vaxrank Public

    Ranked vaccine peptides for personalized cancer immunotherapy

    openvax/vaxrank’s past year of commit activity
    Python 55 Apache-2.0 23 44 2 Updated Oct 7, 2024
  • pepdata Public

    Python interface to amino acid properties and IEDB

    openvax/pepdata’s past year of commit activity
    Python 49 Apache-2.0 17 5 1 Updated Oct 7, 2024
  • mhctools Public

    Python interface to running command-line and web-based MHC binding predictors

    openvax/mhctools’s past year of commit activity
    Python 89 Apache-2.0 22 18 0 Updated Oct 4, 2024
  • isovar Public

    Assembly of RNA reads to determine the effect of a cancer mutation on protein sequence

    openvax/isovar’s past year of commit activity
    Python 25 Apache-2.0 13 34 0 Updated Oct 4, 2024
  • gene-lists Public

    Gene lists related to cancer immunotherapy

    openvax/gene-lists’s past year of commit activity
    Jupyter Notebook 13 Apache-2.0 3 1 0 Updated Sep 11, 2024
  • varlens Public

    commandline manipulation of genomic variants and NGS reads

    openvax/varlens’s past year of commit activity
    Python 19 Apache-2.0 2 6 0 Updated Sep 6, 2024
  • neoantigen-vaccine-pipeline Public

    Bioinformatics pipeline for selecting patient-specific cancer neoantigen vaccines

    openvax/neoantigen-vaccine-pipeline’s past year of commit activity
    Python 76 Apache-2.0 25 49 2 Updated Aug 7, 2024
  • varcode Public

    Library for manipulating genomic variants and predicting their effects

    openvax/varcode’s past year of commit activity
    Python 81 Apache-2.0 24 33 0 Updated Jul 3, 2024
  • pyensembl Public

    Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl

    openvax/pyensembl’s past year of commit activity
    Python 383 Apache-2.0 67 69 3 Updated Jun 4, 2024

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