Repositories list

• 2018247

  Public
  Virtual Human Retina: Simulating Neural Signalling, Degeneration, and Responses to Electrical Stimulation (Ly et al 2025)

  neuron-simulator

  NMODL

  •0•0•0•0•Updated Feb 7, 2025Feb 7, 2025

• 2018021

  Public
  Disinhibitory circuit for arousal effects in perceptual decision making tasks (Beerendonk et al., 2024)

  neural-mass-model

  MATLAB

  •1•0•0•0•Updated Dec 5, 2024Dec 5, 2024

• 2016218

  Public
  A model of rodent mechanoreceptors (LTMRs) (Medlock et al., 2024)

  MATLAB

  •1•0•0•0•Updated Oct 21, 2024Oct 21, 2024

• 2018009

  Public
  Synchronization in a realistic model of CA1 pyramidal neurons (Fiasconaro and Migliore 2024)

  neuron-simulator

  AGS Script

  •1•0•0•0•Updated Oct 21, 2024Oct 21, 2024

• 187473

  Public
  A model of the T-junction of a C-fiber sensory neuron (Sundt et al. 2015)

  neuron-simulatordorsal-root-ganglion-drg-cellconduction-failure

  NMODL

  •3•0•0•0•Updated Oct 1, 2024Oct 1, 2024

• 2016658

  Public
  Persistent Interruption in Parvalbumin-Positive Inhibitory Interneurons: Biophysical and Mathematical Mechanisms (Upchurch et al., 2024)

  neuron-simulator

  Python

  •1•0•0•0•Updated Aug 15, 2024Aug 15, 2024

• 182784

  Public
  Functional balanced networks with synaptic plasticity (Sadeh et al, 2015)

  pythonabstract-integrate-and-fire-leaky-neuronsynaptic-plasticity-long-term-synaptic-plasticity-

  Python

  •2•1•0•1•Updated Aug 9, 2024Aug 9, 2024

• 267741

  Public
  Biochemically detailed model of post-synaptic plasticity for computational analyses of schizophrenia (Maki-Marttunen et al. in press)

  neuron-simulator

  Python

  •2•0•0•1•Updated Jul 31, 2024Jul 31, 2024

• 267694

  Public
  Human and mouse Purkinje cell models (Masoli et al., 2024)

  cerebellumneuron-simulatorpurkinje-cell

  AGS Script

  •

  Other

  •2•2•0•1•Updated Jul 18, 2024Jul 18, 2024

• 2014832

  Public
  Data-driven multiscale model of macaque auditory thalamocortical circuits reproduces in vivo dynamics (Dura-Bernal et al., 2023)

  neuron-simulatornetpyne-simulator

  NMODL

  •1•1•1•0•Updated Jul 14, 2024Jul 14, 2024

• 2017143

  Public
  Glutamate spillover and plateau potentials (Trpevski et al., 2023)

  neuron-simulator

  NMODL

  •

  GNU General Public License v3.0

  •1•0•0•0•Updated Jul 11, 2024Jul 11, 2024

• 2017403

  Public
  C.elegans motor and interneurons (Nicoletti at al. 2024)

  neuron-simulator

  Python

  •3•0•0•0•Updated Jul 11, 2024Jul 11, 2024

• 2017405

  Public
  Parkinsonian Motor Network Model during Multivariable Closed-loop DBS (Fleming et al 2023)

  neuron-simulatorpynn-simulator

  Python

  •1•0•1•0•Updated Jul 11, 2024Jul 11, 2024

• 2016138

  Public
  Heterogeneous Purkinje Cell model (Cirtala et al., accepted)

  neuron-simulator

  NMODL

  •1•0•0•0•Updated Jul 9, 2024Jul 9, 2024

• 2015571

  Public
  Axonal K channel inhibition promotes ectopic burst of hippocampal mossy fiber (Kamiya 2024)

  neuron-simulator

  NMODL

  •1•0•0•0•Updated Jul 9, 2024Jul 9, 2024

• 2014821

  Public
  Myelin dystrophy impairs signal transmission and working memory in a multiscale model of the aging prefrontal cortex (Ibañez, Sengupta et al., 2024)

  neuron-simulator

  Python

  •1•0•0•0•Updated Jun 27, 2024Jun 27, 2024

• 2015954

  Public
  Respiratory control model with brainstem CPG and sensory feedback adapted for COVID-19 associated silent hypoxemia (Diekman et al., 2024)

  MATLAB

  •1•0•0•0•Updated Jun 25, 2024Jun 25, 2024

• 2016996

  Public
  Subthreshold conductances regulate theta-frequency LFPs and spike phase (Sinha and Narayanan, 2015)

  neuron-simulator

  MATLAB

  •1•0•0•0•Updated Jun 10, 2024Jun 10, 2024

• 2016216

  Public
  A novel mechanism for ramping bursts based on slow negative feedback in model respiratory neurons (John et al., accepted)

  MATLAB

  •1•0•0•0•Updated Jun 9, 2024Jun 9, 2024

• 2017006

  Public
  Mouse colorectal afferent ending (Feng et al 2015)

  neuron-simulator

  AMPL

  •1•0•0•0•Updated Jun 9, 2024Jun 9, 2024

• 261460

  Public
  Mice Somatosensory L2/3 Pyramidal cells (Iascone et al 2020)

  neuron-simulatorsynaptic-input-statistic

  AMPL

  •1•0•0•0•Updated May 30, 2024May 30, 2024

• 2016995

  Public
  Markovian model for HCN-encoded current regulated by capsazepine (Wong et al., 2024)

  1•0•0•0•Updated May 23, 2024May 23, 2024

• 267187

  Public
  Biophysical models of AWCon and RMD C. elegans neurons (M. Nicoletti at al. 2019)

  xppautc-elegans-awcon-c-elegans-motor-neuron-rmd

  2•0•0•0•Updated May 22, 2024May 22, 2024

• 2016670

  Public
  Cholinergic modulation of resting state networks (Sanda et al., accepted)

  C++

  •1•0•0•0•Updated May 21, 2024May 21, 2024

• 2015411

  Public
  Touch-Motor Circuit (Gradwell et al., 2024)

  netpyne-simulator

  Python

  •1•0•0•0•Updated May 16, 2024May 16, 2024

• 2016666

  Public
  Electrical properties of dendritic spines (Popovic et al. 2015)

  neuron-simulator

  AMPL

  •1•0•0•0•Updated May 5, 2024May 5, 2024

• 2016663

  Public
  Equivalent excitability achieved via different Nav subtypes (Xie et al., 2024)

  MATLAB

  •1•0•0•0•Updated May 5, 2024May 5, 2024

• 2015423

  Public
  Modeling realistic synaptic inputs of CA1 hippocampal pyramidal neurons and interneurons via Adaptive Generalized Leaky Integrate-and-Fire models (Marascoa et al., 2024)

  AGS Script

  •1•0•0•0•Updated May 5, 2024May 5, 2024

• 2016659

  Public
  Synaptic plasticity for hippocampal place field formation and dynamics (Savelli 2024)

  C++

  •1•0•0•0•Updated Feb 28, 2024Feb 28, 2024

• 71312

  Public
  CA1 pyramidal neuron synaptic integration (Li and Ascoli 2006, 2008)

  neuron-simulatorhippocampus-ca1-pyramidal-glu-celldetailed-neuronal-models-synaptic-integration

  AMPL

  •3•0•0•2•Updated Feb 26, 2024Feb 26, 2024