add bakta_io and bakta_plot to test genomes NF script #223
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| name: CI (Lint/Flake8) | |
| on: | |
| push: | |
| paths-ignore: | |
| - 'README.md' | |
| pull_request: | |
| types: | |
| - opened | |
| - edited | |
| - synchronize | |
| paths-ignore: | |
| - 'README.md' | |
| jobs: | |
| build: | |
| runs-on: 'ubuntu-latest' | |
| strategy: | |
| matrix: | |
| python-version: ['3.9', '3.10', '3.11'] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v1 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Display Python version | |
| run: python -c "import sys; print(sys.version)" | |
| - name: Lint with flake8 | |
| run: | | |
| pip install flake8 | |
| # stop the build if there are Python syntax errors or undefined names | |
| flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| flake8 . --count --exit-zero --max-line-length=240 --statistics |