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swap uniparc download link to Expasy
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oschwengers committed Feb 13, 2023
1 parent 2bf405a commit 70c8aa6
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion db-scripts/buid-db.sh
Original file line number Diff line number Diff line change
Expand Up @@ -103,7 +103,7 @@ python3 ${BAKTA_DB_SCRIPTS}/init-db.py --db bakta.db
printf "\n8/19: download UniProt UniRef90 ...\n"
wget https://ftp.expasy.org/databases/uniprot/current_release/uniref/uniref90/uniref90.xml.gz
wget https://ftp.expasy.org/databases/uniprot/current_release/uniref/uniref50/uniref50.xml.gz
wget https://ftp.uniprot.org/pub/databases/uniprot/current_release/uniparc/uniparc_active.fasta.gz
wget https://ftp.expasy.org/databases/uniprot/current_release/uniparc/uniparc_active.fasta.gz
printf "\n8/19: read UniRef90 entries and build Protein Sequence Cluster sequence and information databases:\n"
python3 ${BAKTA_DB_SCRIPTS}/init-psc.py --taxonomy nodes.dmp --uniref90 uniref90.xml.gz --uniref50 uniref50.xml.gz --uniparc uniparc_active.fasta.gz --db bakta.db --psc psc.faa --sorf sorf.faa
printf "\n8/19: build PSC Diamond db ...\n"
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