add N90 to bakta_io txt output

oschwengers · Jan 24, 2025 · c7a8155 · c7a8155
1 parent cbd3804
commit c7a8155
Showing 1 changed file with 2 additions and 0 deletions.
diff --git a/bakta/json_io.py b/bakta/json_io.py
@@ -170,6 +170,8 @@ def main():
         fh_out.write(f"Count: {len(data['sequences'])}\n")
         fh_out.write(f"GC: {100 * data['stats']['gc']:.1f}\n")
         fh_out.write(f"N50: {data['stats']['n50']:}\n")
+        if('n90' in data['stats']):
+            fh_out.write(f"N90: {data['stats']['n90']:}\n")
         fh_out.write(f"N ratio: {100 * data['stats']['n_ratio']:.1f}\n")
         fh_out.write(f"coding density: {100 * data['stats']['coding_ratio']:.1f}\n")
         fh_out.write('\nAnnotation:\n')