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Improve PILER-CR CRISPR parser #249

Merged
merged 7 commits into from
Oct 24, 2023
Merged

Improve PILER-CR CRISPR parser #249

merged 7 commits into from
Oct 24, 2023

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oschwengers
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This PR expands the PILER-CR parser of the CRISPR array detection to extract, store and output repeats and spacers.

Repeats & spacers are written to JSON, GFF3 and TSV outputs, only, since INSDC does not have dedicated feature keys to represent these features (please do reach out to me, if I missed something here).

@oschwengers oschwengers added the enhancement New feature or request label Oct 19, 2023
@oschwengers oschwengers added this to the v1.9.0 milestone Oct 19, 2023
@oschwengers oschwengers self-assigned this Oct 19, 2023
@oschwengers oschwengers merged commit 53df2bf into main Oct 24, 2023
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@oschwengers oschwengers deleted the improve-crispr-parser branch October 24, 2023 15:59
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