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updated environment.yml and Dockerfile #345

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merged 3 commits into from
Nov 15, 2024
Merged

updated environment.yml and Dockerfile #345

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a17e2b0
updated environment.yml and Dockerfile
mjfos2r Nov 14, 2024
dc683d2
Update environment.yml
mjfos2r Nov 15, 2024
91f1b78
Update environment.yml
mjfos2r Nov 15, 2024
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2 changes: 1 addition & 1 deletion Dockerfile
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Expand Up @@ -13,7 +13,7 @@ RUN apk update && apk add wget tar bash \
&& rm glibc-2.32-r0.apk \
&& wget --no-iri -qO- https://micromamba.snakepit.net/api/micromamba/linux-64/latest | tar -xvj bin/micromamba \
&& touch /root/.bashrc \
&& ./bin/micromamba shell init -s bash -p /opt/conda \
&& ./bin/micromamba shell init -s bash -r /opt/conda \
&& cp /root/.bashrc /opt/conda/bashrc

COPY environment.yml /tmp/
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1 change: 1 addition & 0 deletions environment.yml
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Expand Up @@ -4,6 +4,7 @@ channels:
- bioconda
- defaults
dependencies:
- python >=3.9,<3.12
- biopython>=1.78
- xopen>=1.5.0
- requests>=2.25.1
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