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📊 WHO/Global Polio Eradication Initiative polio datasets #2502

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56df167
adding snapshot - meadow - garden
spoonerf Apr 8, 2024
cbc1fa7
adding garden and grapher steps
spoonerf Apr 9, 2024
c6f8973
fudging the origins issue
spoonerf Apr 9, 2024
751fb68
adding some comments
spoonerf Apr 9, 2024
a52c87b
adding historical polio cases from who web archive
spoonerf Apr 9, 2024
faf641b
garden step historical cases
spoonerf Apr 9, 2024
8337efb
adding historical data and using correction factor to estimate total …
spoonerf Apr 10, 2024
b9e38e0
adding metadata
spoonerf Apr 10, 2024
29b96a9
adding regions aggs
spoonerf Apr 10, 2024
41ccea2
Merge branch 'master' into polio
spoonerf Apr 11, 2024
41f047b
wip
spoonerf Apr 12, 2024
bf6173a
Merge branch 'master' into polio
spoonerf Apr 12, 2024
59286a4
adding gpei fasttrack and metadat
spoonerf Apr 12, 2024
6d01ef8
shuffling things about
spoonerf Apr 12, 2024
4730968
adding certification snapshot
spoonerf Apr 12, 2024
ca91185
adding meadow step for certification
spoonerf Apr 12, 2024
fbb03b8
adding polio free countries from gpei
spoonerf Apr 12, 2024
26a585b
adding polio free countries
spoonerf Apr 12, 2024
631a061
removing garden step polion status
spoonerf Apr 15, 2024
d96a472
Merge branch 'master' into polio
spoonerf Apr 17, 2024
55ed620
adding population dependencies
spoonerf Apr 17, 2024
985e043
adding per million and harmonizing historical data too
spoonerf Apr 17, 2024
11ae1c6
adding year of last wild polio case
spoonerf Apr 17, 2024
104728a
wip
spoonerf Apr 17, 2024
e8f2e3e
wip
spoonerf Apr 17, 2024
f97c957
updates
spoonerf Apr 17, 2024
5e6d39f
adding who regional certification
spoonerf Apr 17, 2024
83001e9
adding grapher step and ironing out some wrinkles
spoonerf Apr 17, 2024
898aab4
fixing some warnings
spoonerf Apr 17, 2024
c7fd009
getting it going on grapher
spoonerf Apr 17, 2024
6e14d8c
changing dataset titles
spoonerf Apr 17, 2024
db4a146
add low risk
spoonerf Apr 17, 2024
e98a8cb
sorting out the surveillance variable
spoonerf Apr 17, 2024
16fae49
fixing missing arguments
spoonerf Apr 17, 2024
8cb1453
not using ordinal for now
spoonerf Apr 17, 2024
54bd3f2
adding pablo arriagada's suggestions
spoonerf Apr 18, 2024
dbaeb9b
Merge branch 'master' into polio
spoonerf Apr 18, 2024
fc30505
adding pablo rosado's suggestions
spoonerf Apr 18, 2024
d25c23d
fixing error
spoonerf Apr 18, 2024
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36 changes: 36 additions & 0 deletions dag/health.yml
Original file line number Diff line number Diff line change
Expand Up @@ -512,3 +512,39 @@ steps:
- data://garden/demography/2023-03-31/population
data://grapher/health/2024-04-02/organ_donation_and_transplantation:
- data://garden/health/2024-04-02/organ_donation_and_transplantation

# Polio AFP surveillance
data://meadow/who/2024-04-08/polio_afp:
- snapshot://who/2024-04-08/polio_afp.csv

# Polio historical data
data://meadow/who/2024-04-09/polio_historical:
- snapshot://who/2024-04-09/polio_historical.xls
data://garden/who/2024-04-09/polio_historical:
- data://meadow/who/2024-04-09/polio_historical

# Combining polio datasets
data://garden/who/2024-04-08/polio:
- data://meadow/who/2024-04-08/polio_afp
- data://meadow/who/2024-04-09/polio_historical
- data://garden/wb/2023-04-30/income_groups
- data://garden/regions/2023-01-01/regions
- data://garden/demography/2023-03-31/population
- snapshot://fasttrack/latest/gpei.csv
- snapshot://health/2024-04-12/polio_status.csv
data://grapher/who/2024-04-08/polio:
- data://garden/who/2024-04-08/polio

# Polio certification status
data://meadow/health/2024-04-12/polio_status:
- snapshot://health/2024-04-12/polio_status.csv

# Polio free countries
data://meadow/health/2024-04-12/polio_free_countries:
- snapshot://health/2024-04-12/polio_free_countries.csv
data://garden/health/2024-04-12/polio_free_countries:
- data://meadow/health/2024-04-12/polio_status
- data://meadow/health/2024-04-12/polio_free_countries
- data://garden/regions/2023-01-01/regions
data://grapher/health/2024-04-12/polio_free_countries:
- data://garden/health/2024-04-12/polio_free_countries
Original file line number Diff line number Diff line change
@@ -0,0 +1,217 @@
{
"Afghanistan": "Afghanistan",
"Albania": "Albania",
"Algeria": "Algeria",
"Andorra": "Andorra",
"Angola": "Angola",
"Antigua and Barbuda": "Antigua and Barbuda",
"Argentina": "Argentina",
"Armenia": "Armenia",
"Australia": "Australia",
"Austria": "Austria",
"Azerbaijan": "Azerbaijan",
"Bahamas": "Bahamas",
"Bahrain": "Bahrain",
"Bangladesh": "Bangladesh",
"Belarus": "Belarus",
"Belgium": "Belgium",
"Belize": "Belize",
"Benin": "Benin",
"Bhutan": "Bhutan",
"Bosnia and Herzegovina": "Bosnia and Herzegovina",
"Botswana": "Botswana",
"Brazil": "Brazil",
"Brunei Darussalam": "Brunei",
"Bulgaria": "Bulgaria",
"Burkina Faso": "Burkina Faso",
"Burundi": "Burundi",
"Cambodia": "Cambodia",
"Cameroon": "Cameroon",
"Canada": "Canada",
"Cape Verde": "Cape Verde",
"Central African Republic": "Central African Republic",
"Chad": "Chad",
"Chile": "Chile",
"China": "China",
"Colombia": "Colombia",
"Comoros": "Comoros",
"Congo": "Congo",
"Cook Islands": "Cook Islands",
"Costa Rica": "Costa Rica",
"Croatia": "Croatia",
"Cuba": "Cuba",
"Cyprus": "Cyprus",
"Czech Republic": "Czechia",
"Denmark": "Denmark",
"Djibouti": "Djibouti",
"Dominica": "Dominica",
"Dominican Republic": "Dominican Republic",
"Ecuador": "Ecuador",
"Egypt": "Egypt",
"El Salvador": "El Salvador",
"Equatorial Guinea": "Equatorial Guinea",
"Eritrea": "Eritrea",
"Estonia": "Estonia",
"Ethiopia": "Ethiopia",
"Fiji": "Fiji",
"Finland": "Finland",
"France": "France",
"Gabon": "Gabon",
"Gambia": "Gambia",
"Georgia": "Georgia",
"Germany": "Germany",
"Ghana": "Ghana",
"Greece": "Greece",
"Grenada": "Grenada",
"Guatemala": "Guatemala",
"Guinea": "Guinea",
"Guinea-Bissau": "Guinea-Bissau",
"Guam": "Guam",
"Guyana": "Guyana",
"Haiti": "Haiti",
"Honduras": "Honduras",
"Hungary": "Hungary",
"Iceland": "Iceland",
"India": "India",
"Indonesia": "Indonesia",
"Iraq": "Iraq",
"Ireland": "Ireland",
"Israel": "Israel",
"Italy": "Italy",
"Jamaica": "Jamaica",
"Japan": "Japan",
"Jordan": "Jordan",
"Kazakhstan": "Kazakhstan",
"Kenya": "Kenya",
"Kiribati": "Kiribati",
"Kuwait": "Kuwait",
"Kyrgyzstan": "Kyrgyzstan",
"Latvia": "Latvia",
"Lebanon": "Lebanon",
"Lesotho": "Lesotho",
"Liberia": "Liberia",
"Lithuania": "Lithuania",
"Luxembourg": "Luxembourg",
"Madagascar": "Madagascar",
"Malawi": "Malawi",
"Malaysia": "Malaysia",
"Maldives": "Maldives",
"Mali": "Mali",
"Malta": "Malta",
"Marshall Islands": "Marshall Islands",
"Mauritania": "Mauritania",
"Mauritius": "Mauritius",
"Mexico": "Mexico",
"Monaco": "Monaco",
"Mongolia": "Mongolia",
"Morocco": "Morocco",
"Mozambique": "Mozambique",
"Myanmar": "Myanmar",
"Namibia": "Namibia",
"Nauru": "Nauru",
"Nepal": "Nepal",
"Netherlands": "Netherlands",
"New Zealand": "New Zealand",
"Nicaragua": "Nicaragua",
"Niger": "Niger",
"Nigeria": "Nigeria",
"Niue": "Niue",
"Norway": "Norway",
"Oman": "Oman",
"Pakistan": "Pakistan",
"Palau": "Palau",
"Panama": "Panama",
"Papua New Guinea": "Papua New Guinea",
"Paraguay": "Paraguay",
"Peru": "Peru",
"Philippines": "Philippines",
"Poland": "Poland",
"Portugal": "Portugal",
"Qatar": "Qatar",
"Republic of Korea": "South Korea",
"Republic of Moldova": "Moldova",
"Romania": "Romania",
"Russian Federation": "Russia",
"Rwanda": "Rwanda",
"Saint Kitts and Nevis": "Saint Kitts and Nevis",
"Saint Lucia": "Saint Lucia",
"Saint Vincent and the Grenadines": "Saint Vincent and the Grenadines",
"Samoa": "Samoa",
"San Marino": "San Marino",
"Sao Tome and Principe": "Sao Tome and Principe",
"Saudi Arabia": "Saudi Arabia",
"Senegal": "Senegal",
"Seychelles": "Seychelles",
"Sierra Leone": "Sierra Leone",
"Singapore": "Singapore",
"Slovakia": "Slovakia",
"Slovenia": "Slovenia",
"Solomon Islands": "Solomon Islands",
"Somalia": "Somalia",
"South Africa": "South Africa",
"Spain": "Spain",
"Sri Lanka": "Sri Lanka",
"Sudan": "Sudan",
"Suriname": "Suriname",
"Sweden": "Sweden",
"Switzerland": "Switzerland",
"Syrian Arab Republic": "Syria",
"Tajikistan": "Tajikistan",
"Thailand": "Thailand",
"Togo": "Togo",
"Tonga": "Tonga",
"Trinidad and Tobago": "Trinidad and Tobago",
"Tunisia": "Tunisia",
"Turkmenistan": "Turkmenistan",
"Tuvalu": "Tuvalu",
"Uganda": "Uganda",
"Ukraine": "Ukraine",
"United Arab Emirates": "United Arab Emirates",
"United Kingdom": "United Kingdom",
"United Republic of Tanzania": "Tanzania",
"United States of America": "United States",
"Uruguay": "Uruguay",
"Uzbekistan": "Uzbekistan",
"Vanuatu": "Vanuatu",
"Viet Nam": "Vietnam",
"Yemen": "Yemen",
"Zambia": "Zambia",
"Zimbabwe": "Zimbabwe",
"Libyan Arab Jamahiriya": "Libya",
"American Samoa": "American Samoa",
"Anguilla": "Anguilla",
"Bermuda": "Bermuda",
"Bolivia": "Bolivia",
"British Virgin Islands": "British Virgin Islands",
"Cayman Islands": "Cayman Islands",
"East Timor": "East Timor",
"French Guiana": "French Guiana",
"French Polynesia": "French Polynesia",
"Guadeloupe": "Guadeloupe",
"Iran": "Iran",
"Martinique": "Martinique",
"Montserrat": "Montserrat",
"Netherlands Antilles": "Netherlands Antilles",
"New Caledonia": "New Caledonia",
"Puerto Rico": "Puerto Rico",
"Reunion": "Reunion",
"Saint Helena": "Saint Helena",
"Swaziland": "Eswatini",
"Tokelau": "Tokelau",
"Turkey": "Turkey",
"Turks and Caicos Islands": "Turks and Caicos Islands",
"Venezuela": "Venezuela",
"Wallis and Futuna": "Wallis and Futuna",
"Barabados": "Barbados",
"Cote d\u2019Ivoire": "Cote d'Ivoire",
"Democratic People\u2019s Rep. of Korea": "North Korea",
"Federated States of Micronesia": "Micronesia (country)",
"Former Yugoslav Rep. of Macedonia": "North Macedonia",
"Hong Kong, SAR": "Hong Kong",
"Lao People\u2019s Democratic Republic": "Laos",
"Macao, SAR": "Macao",
"Mariana Islands": "Northern Mariana Islands",
"Palestine N.A.": "Palestine",
"US Virgin Islands": "United States Virgin Islands",
"Democratic Republic of the Congo": "Democratic Republic of Congo"
}
Original file line number Diff line number Diff line change
@@ -0,0 +1,30 @@
definitions:
common:
presentation:
topic_tags:
- Global Health
- Eradication of Diseases
processing_level: minor
unit: ""
short_unit: ""
display:
numDecimalPlaces: 0

dataset:
update_period_days: 365

tables:
polio_free_countries:
variables:
latest_year_wild_polio_case:
title: Latest year of wild polio case
description_short: The most recent year in which a case of wild poliovirus was detected in a country.
unit: ""
display:
numDecimalPlaces: 0
status:
title: Polio-free status
description_short: The status of a country in terms of polio eradication.
unit: ""
display:
numDecimalPlaces: 0
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