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[flake8] | ||
max-line-length = 88 | ||
ignore = D105, E731, W503, F821, E203 | ||
docstring-convention = numpy | ||
per-file-ignores = __init__.py:F401 | ||
exclude = | ||
.git | ||
.github | ||
.dvc | ||
__pycache__ | ||
.venv | ||
.mypy_cache | ||
.pytest_cache | ||
conf.py |
Validating CODEOWNERS rules …
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* @jeandut @mandreux-owkin @qklopfenstein-owkin |
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--- | ||
name: Bug report | ||
about: Create a report to help improve the code | ||
title: "[BUG] " | ||
labels: bug | ||
assignees: '' | ||
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--- | ||
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**Describe the bug** | ||
A clear and concise description of what the bug is. | ||
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**To Reproduce** | ||
Provide snippets of code and steps on how to reproduce the behavior. | ||
Please also specify the version you are using. | ||
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**Expected behavior** | ||
A clear and concise description of what you expected to happen. | ||
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**Screenshots** | ||
If applicable, add screenshots to help explain your problem. | ||
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**Desktop (please complete the following information):** | ||
- OS: [e.g. iOS] | ||
- Python version | ||
- Code version [e.g. 0.02 or commit hash] | ||
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**Additional context** | ||
Add any other context about the problem here. |
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--- | ||
name: Feature request | ||
about: Suggest an idea for this project | ||
title: '' | ||
labels: '' | ||
assignees: '' | ||
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--- | ||
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**Is your feature request related to a problem? Please describe.** | ||
A clear and concise description of what the problem is. Ex. I'm always frustrated when [...] | ||
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**Describe the solution you'd like** | ||
A clear and concise description of what you want to happen. | ||
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**Describe alternatives you've considered** | ||
A clear and concise description of any alternative solutions or features you've considered. | ||
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**Additional context** | ||
Add any other context or screenshots about the feature request here. |
Empty file.
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<!-- | ||
Thanks for contributing a pull request! | ||
This template is designed to help save time for reviewers and yourself. | ||
1. If your PR is not ready for review yet, please do not hesitate to publish it | ||
as a draft to run the CI. | ||
2. You can prefix the title of the PR with an acronym that indicates the | ||
type of PR, e.g. CI if related to the CI, DOC for the documentation, | ||
FIX if there is a bug fix, FEAT if a new feature is added, EXP if a new | ||
experiment is added. | ||
--> | ||
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#### Reference Issue or PRs | ||
<!-- | ||
If this PR is related to an existing issue or PR please reference it, eg: | ||
Fixes #1234. | ||
You can use github keywords as described: | ||
https://github.com/blog/1506-closing-issues-via-pull-requests | ||
--> | ||
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#### What does your PR implement? Please be specific | ||
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#### Checklist | ||
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Have you: | ||
- [ ] Added unit tests under `tests/` (if you modified the `fedeca` folder)? | ||
- [ ] Added docstrings for all functions? | ||
- [ ] Added instructions on how to run your experimental file, and the | ||
expected results (e.g. in a README or in the file itself)? |
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name: build_docs | ||
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# Controls when the workflow will run | ||
on: | ||
push: | ||
branches: | ||
- 'main' | ||
pull_request: | ||
branches: | ||
- 'main' | ||
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# A workflow run is made up of one or more jobs that can run sequentially or in parallel | ||
jobs: | ||
build_docs: | ||
runs-on: ${{ matrix.os }} | ||
strategy: | ||
matrix: | ||
os: [ubuntu-latest] | ||
python: ["3.9"] | ||
# python: ["3.9", "3.10", "3.11"] # TODO: expand to other pythons | ||
steps: | ||
- uses: actions/checkout@v3 | ||
- uses: actions/setup-python@v4 | ||
with: | ||
python-version: ${{ matrix.python }} | ||
- name: Install dependencies | ||
env: | ||
GIT_TOKEN: ${{ secrets.GIT_TOKEN }} | ||
GIT_USERNAME: ${{ secrets.GIT_USERNAME }} | ||
run: | | ||
python -m pip install --upgrade pip | ||
pip install -e ".[all_extra]" | ||
- name: Compile docs | ||
run: | | ||
cd docs | ||
make clean html | ||
- name: Publish docs to gh-pages | ||
uses: peaceiris/actions-gh-pages@v3 | ||
if: ${{ github.event_name == 'push' && github.ref == 'refs/heads/main' }} | ||
with: | ||
publish_branch: gh-pages | ||
github_token: ${{ secrets.GITHUB_TOKEN }} | ||
publish_dir: docs/build/html/ | ||
force_orphan: true |
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name: linter | ||
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on: | ||
push: | ||
branches: | ||
- 'main' | ||
pull_request: | ||
branches: | ||
- 'main' | ||
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jobs: | ||
lint: | ||
name: Lint code base | ||
runs-on: ubuntu-latest | ||
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steps: | ||
- name: Checkout code | ||
uses: actions/checkout@v2 | ||
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- name: Setup Python 3.9 | ||
uses: actions/setup-python@v2 | ||
with: | ||
python-version: 3.9 | ||
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- name: Lint with flake | ||
run: | | ||
pip install flake8 | ||
pip install flake8-docstrings | ||
flake8 fedeca/ --max-line-length=88 --append-config .flake8 |
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name: pr-validation | ||
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# Controls when the workflow will run | ||
on: | ||
pull_request: | ||
paths-ignore: | ||
- 'experiments/**' # if only the exps are modified, no need to run it | ||
- 'docs/**' # if only the docs are modified, no need to run it | ||
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# A workflow run is made up of one or more jobs that can run sequentially or in parallel | ||
jobs: | ||
run_tests: | ||
runs-on: ${{ matrix.os }} | ||
strategy: | ||
matrix: | ||
os: [ubuntu-latest] | ||
python: ["3.9"] | ||
# python: ["3.9", "3.10", "3.11"] # TODO: expand to other pythons | ||
steps: | ||
- uses: actions/checkout@v3 | ||
- uses: actions/setup-python@v4 | ||
with: | ||
python-version: ${{ matrix.python }} | ||
- name: Install dependencies | ||
env: | ||
GIT_TOKEN: ${{ secrets.GIT_TOKEN }} | ||
GIT_USERNAME: ${{ secrets.GIT_USERNAME }} | ||
run: | | ||
python -m pip install --upgrade pip | ||
pip install -e ".[all_extra]" | ||
- name: Testing with pytest | ||
run: | | ||
coverage run -m pytest -v fedeca | ||
- name: Generate code coverage report | ||
run: | | ||
coverage html --omit="*/local-worker/*" | ||
- name: Upload coverage artifacts | ||
uses: actions/upload-artifact@v3 | ||
with: | ||
name: test-coverage-report | ||
path: htmlcov/ | ||
retention-days: 20 |
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# Byte-compiled / optimized / DLL files | ||
__pycache__/ | ||
*.py[cod] | ||
*$py.class | ||
tmp/ | ||
local-worker/ | ||
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# C extensions | ||
*.so | ||
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# Distribution / packaging | ||
.Python | ||
build/ | ||
develop-eggs/ | ||
dist/ | ||
downloads/ | ||
eggs/ | ||
.eggs/ | ||
lib/ | ||
lib64/ | ||
parts/ | ||
sdist/ | ||
var/ | ||
wheels/ | ||
pip-wheel-metadata/ | ||
share/python-wheels/ | ||
*.egg-info/ | ||
.installed.cfg | ||
*.egg | ||
MANIFEST | ||
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# PyInstaller | ||
# Usually these files are written by a python script from a template | ||
# before PyInstaller builds the exe, so as to inject date/other infos into it. | ||
*.manifest | ||
*.spec | ||
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# Installer logs | ||
pip-log.txt | ||
pip-delete-this-directory.txt | ||
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# Unit test / coverage reports | ||
htmlcov/ | ||
.tox/ | ||
.nox/ | ||
.coverage | ||
.coverage.* | ||
.cache | ||
nosetests.xml | ||
coverage.xml | ||
*.cover | ||
*.py,cover | ||
.hypothesis/ | ||
.pytest_cache/ | ||
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# Translations | ||
*.mo | ||
*.pot | ||
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# Django stuff: | ||
*.log | ||
local_settings.py | ||
db.sqlite3 | ||
db.sqlite3-journal | ||
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# Flask stuff: | ||
instance/ | ||
.webassets-cache | ||
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# Scrapy stuff: | ||
.scrapy | ||
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# Sphinx documentation | ||
docs/_build/ | ||
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# PyBuilder | ||
target/ | ||
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# Jupyter Notebook | ||
.ipynb_checkpoints | ||
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# IPython | ||
profile_default/ | ||
ipython_config.py | ||
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# pyenv | ||
.python-version | ||
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# pipenv | ||
# According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control. | ||
# However, in case of collaboration, if having platform-specific dependencies or dependencies | ||
# having no cross-platform support, pipenv may install dependencies that don't work, or not | ||
# install all needed dependencies. | ||
#Pipfile.lock | ||
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# PEP 582; used by e.g. github.com/David-OConnor/pyflow | ||
__pypackages__/ | ||
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# Celery stuff | ||
celerybeat-schedule | ||
celerybeat.pid | ||
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# SageMath parsed files | ||
*.sage.py | ||
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# Environments | ||
.env | ||
.venv | ||
env/ | ||
venv/ | ||
ENV/ | ||
env.bak/ | ||
venv.bak/ | ||
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# Spyder project settings | ||
.spyderproject | ||
.spyproject | ||
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# Rope project settings | ||
.ropeproject | ||
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# mkdocs documentation | ||
/site | ||
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# mypy | ||
.mypy_cache/ | ||
.dmypy.json | ||
dmypy.json | ||
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# Pyre type checker | ||
.pyre/ | ||
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# other files | ||
.DS_Store | ||
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# substra | ||
temp/ | ||
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# fedeca | ||
tokens/ | ||
iptw_experiment/ |
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[settings] | ||
profile = black | ||
skip=__init__.py |
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