#58 correct dont add equivalent the same molecule #36
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # © 2024 INRAE | |
| # SPDX-FileContributor: Marcellino Palerme <[email protected]> | |
| # | |
| # SPDX-License-Identifier: MIT | |
| name: Validate | |
| on: | |
| push: | |
| branches: '*' | |
| permissions: | |
| contents: write | |
| pull-requests: write | |
| checks: write | |
| env: | |
| PGPASSWORD: ep2m2 | |
| PGUSER: ep2m2 | |
| PGPORT: 5432 | |
| PGDATABASE: ep2m2db | |
| jobs: | |
| # Check if the repository is REUSE compliant | |
| Check-REUSE-compliant: | |
| runs-on: ubuntu-latest | |
| # Outputs of the job is the result of the REUSE compliance check | |
| outputs: | |
| reuse_fail: ${{ steps.fail.outputs.result }} | |
| reuse_sucesse: ${{ steps.success.outputs.result }} | |
| steps: | |
| # Load my repo | |
| - uses: actions/checkout@v4 | |
| # Check if futur new repo is REUSE compliant | |
| - name: REUSE Compliance Check | |
| uses: fsfe/reuse-action@v3 | |
| with: | |
| args: --include-submodules lint | |
| # Return the result of the REUSE compliance check | |
| - name: Badge not REUSE compliant | |
| if: ${{ failure() }} | |
| id: fail | |
| run: echo "result=false" >> "$GITHUB_OUTPUT" | |
| - name: Badge REUSE compliant | |
| if: ${{ success() }} | |
| id: success | |
| run: echo "result=true" >> "$GITHUB_OUTPUT" | |
| # Test the project and generate coverage | |
| test: | |
| runs-on: ubuntu-latest | |
| # Outputs of the job are the results of the tests and the coverage | |
| outputs: | |
| # Results of the tests | |
| successTests: ${{ steps.extract_results.outputs.successTests }} | |
| totalTests: ${{ steps.extract_results.outputs.totalTests }} | |
| passedTests: ${{ steps.extract_results.outputs.passedTests }} | |
| failedTests: ${{ steps.extract_results.outputs.failedTests }} | |
| todoTests: ${{ steps.extract_results.outputs.todoTests }} | |
| # Coverage | |
| branchesCov: ${{ steps.extract_coverage.outputs.branchesCov }} | |
| functionsCov: ${{ steps.extract_coverage.outputs.functionsCov }} | |
| linesCov: ${{ steps.extract_coverage.outputs.linesCov }} | |
| statementsCov: ${{ steps.extract_coverage.outputs.statementsCov }} | |
| totalCov: ${{ steps.extract_coverage.outputs.totalCov }} | |
| # Colors for the coverage | |
| branchesColorCov: ${{ steps.extract_coverage.outputs.branchesColorCov }} | |
| functionsColorCov: ${{ steps.extract_coverage.outputs.functionsColorCov }} | |
| linesColorCov: ${{ steps.extract_coverage.outputs.linesColorCov }} | |
| statementsColorCov: ${{ steps.extract_coverage.outputs.statementsColorCov }} | |
| totalColorCov: ${{ steps.extract_coverage.outputs.totalColorCov }} | |
| services: | |
| service-p2m2tool-api: | |
| image: inraep2m2/service-p2m2tools-api | |
| ports: | |
| - 8080:8080 | |
| db: | |
| image: postgres:latest | |
| # Provide the password for postgres | |
| env: | |
| POSTGRES_PASSWORD: ep2m2 | |
| POSTGRES_DB: ep2m2db | |
| POSTGRES_USER: ep2m2 | |
| # Set health checks to wait until postgres has started | |
| options: >- | |
| --health-cmd pg_isready | |
| --health-interval 10s | |
| --health-timeout 5s | |
| --health-retries 5 | |
| ports: | |
| - 5432:5432 | |
| steps: | |
| - name: Get repository | |
| uses: actions/checkout@v3 | |
| - name: Use Node.js | |
| uses: actions/setup-node@v3 | |
| with: | |
| node-version: latest | |
| cache: 'npm' | |
| - name: Installation project s packages | |
| run: npm ci | |
| - name: Configure database | |
| run: node ./db/init.js | |
| - name: Test and Coverage | |
| run: npm run test | |
| - name: Report coverage | |
| if: always() | |
| uses: davelosert/vitest-coverage-report-action@v2 | |
| with: | |
| file-coverage-mode: all | |
| github-token: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Extract coverage results | |
| if: always() | |
| id: extract_coverage | |
| run: | | |
| npm install @actions/core | |
| node .github/workflows/extractResultsCov.js | |
| - name: Summary Tests | |
| uses: EnricoMi/publish-unit-test-result-action@v2 | |
| if: always() | |
| with: | |
| files: | | |
| ./test/results/*.xml | |
| - name: Complet report tests | |
| uses: dorny/test-reporter@v1 | |
| if: always() | |
| with: | |
| reporter: "java-junit" | |
| name: Test Unit | |
| path: ./test/results/*.xml | |
| - name: Extract test results | |
| if: always() | |
| id: extract_results | |
| run: | | |
| node .github/workflows/extractResultsTest.js | |
| # Generate all badges | |
| badges: | |
| needs: [test, Check-REUSE-compliant] | |
| runs-on: ubuntu-latest | |
| if: always() | |
| steps: | |
| - name: Get repository | |
| uses: actions/checkout@v3 | |
| - name: Generate Badges branches coverage | |
| if: always() | |
| uses: jaywcjlove/generated-badges@main | |
| with: | |
| label: Branches | |
| status: ${{ needs.test.outputs.branchesCov }} | |
| color: ${{ needs.test.outputs.branchesColorCov }} | |
| output: badges/coverage-branches.svg | |
| - name: Generate Badges functions coverage | |
| if: always() | |
| uses: jaywcjlove/generated-badges@main | |
| with: | |
| label: Functions | |
| status: ${{ needs.test.outputs.functionsCov }} | |
| color: ${{ needs.test.outputs.functionsColorCov }} | |
| output: badges/coverage-functions.svg | |
| - name: Generate Badges lines coverage | |
| if: always() | |
| uses: jaywcjlove/generated-badges@main | |
| with: | |
| label: Lines | |
| status: ${{ needs.test.outputs.linesCov }} | |
| color: ${{ needs.test.outputs.linesColorCov }} | |
| output: badges/coverage-lines.svg | |
| - name: Generate Badges statements coverage | |
| if: always() | |
| uses: jaywcjlove/generated-badges@main | |
| with: | |
| label: Statements | |
| status: ${{ needs.test.outputs.statementsCov }} | |
| color: ${{ needs.test.outputs.statementsColorCov }} | |
| output: badges/coverage-statements.svg | |
| - name: Generate Badges total coverage | |
| if: always() | |
| uses: jaywcjlove/generated-badges@main | |
| with: | |
| label: Coverage total | |
| status: ${{ needs.test.outputs.totalCov }} | |
| color: ${{ needs.test.outputs.totalColorCov }} | |
| output: badges/coverage-total.svg | |
| - name: Not Reuse compliant badge | |
| if: ${{ needs.Check-REUSE-compliant.outputs.reuse_fail == 'false' }} | |
| uses: jaywcjlove/generated-badges@main | |
| with: | |
| label: Reuse compliant | |
| status: NO | |
| color: 'red' | |
| output: badges/reuse_compliant.svg | |
| - name: Reuse compliant badge | |
| if: ${{ needs.Check-REUSE-compliant.outputs.reuse_sucesse == 'true' }} | |
| uses: jaywcjlove/generated-badges@main | |
| with: | |
| label: Reuse compliant | |
| status: YES | |
| color: 'green' | |
| output: badges/reuse_compliant.svg | |
| - name: Generate Badges fail result global tests | |
| if: needs.test.outputs.successTests == 'false' | |
| uses: jaywcjlove/generated-badges@main | |
| with: | |
| label: Tests | |
| status: Fail | |
| color: 'red' | |
| output: badges/tests-result.svg | |
| - name: Generate Badges pass result global tests | |
| if: needs.test.outputs.successTests == 'true' | |
| uses: jaywcjlove/generated-badges@main | |
| with: | |
| label: Tests | |
| status: Pass | |
| color: 'green' | |
| output: badges/tests-result.svg | |
| - name: Generate Badges number tests | |
| if: always() | |
| uses: jaywcjlove/generated-badges@main | |
| with: | |
| label: Number of tests | |
| status: ${{ needs.test.outputs.totalTests }} | |
| color: 'black' | |
| output: badges/tests-total.svg | |
| - name: Generate Badges number passed tests | |
| if : always() | |
| uses: jaywcjlove/generated-badges@main | |
| with: | |
| label: Passed tests | |
| status: ${{ needs.test.outputs.passedTests }} | |
| color: 'green' | |
| output: badges/tests-passed.svg | |
| - name: Generate Badges number failed tests | |
| if: always() | |
| uses: jaywcjlove/generated-badges@main | |
| with: | |
| label: Failed tests | |
| status: ${{ needs.test.outputs.failedTests }} | |
| color: 'red' | |
| output: badges/tests-failed.svg | |
| - name: Generate Badges number todo tests | |
| if: always() | |
| uses: jaywcjlove/generated-badges@main | |
| with: | |
| label: Todo tests | |
| status: ${{ needs.test.outputs.todoTests }} | |
| color: 'yellow' | |
| output: badges/tests-todo.svg | |
| - name: Commit all badges | |
| if: always() | |
| run: | | |
| git config --local user.email "[email protected]" | |
| git config --local user.name "GitHub Action" | |
| git add badges/* | |
| git commit -m "Update all badges" | |
| git pull --rebase | |
| git push | |
| # Not fail if we have no changes | |
| continue-on-error: true # This step won't affect the job's outcome | |
| - name: Add badge to README | |
| if: always() | |
| uses: jaywcjlove/github-action-modify-file-content@main | |
| with: | |
| path: README.md | |
| openDelimiter: <!--REUSE--> | |
| closeDelimiter: <!--REUSE-END--> | |
| body: | | |
| </br> | |
| [](https://github.com/p2m2/EP2M2/actions/runs/${{ github.run_id }}) | |
| - name: Add tests badges to README | |
| if: always() | |
| uses: jaywcjlove/github-action-modify-file-content@main | |
| with: | |
| path: README.md | |
| body: | | |
| </br> | |
| [    ](https://github.com/p2m2/EP2M2/actions/runs/${{ github.run_id }}) </br>[   ](https://github.com/p2m2/EP2M2/actions/runs/${{ github.run_id }}) | |