test workflow

.env.dev

@@ -6,3 +6,8 @@
 NUXT_URL_P2M2_API_PARSE="http://localhost:8080/p2m2tools/api/format/parse/"
 NUXT_URL_P2M2_API_SNIF="http://localhost:8080/p2m2tools/api/format/sniffer"
 NUXT_PATH_SHARE="./shareFile"
+PGHOST="localhost"
+PGPASSWORD="ep2m2"
+PGUSER="ep2m2"
+PGPORT="5432"
+PGDATABASE="ep2m2db"

README.md

@@ -22,6 +22,23 @@ metabolomic target analyzes manager.
   - Associated calibration curves
 
 ## Installation
+
+### Manual installation
+
+```bash
+npm i
+```
+
+### Running tests
+
+```bash
+docker volume prune
+## database and API
+docker compose --env-file .env.test -f compose.dev.yaml up -d
+
+rpm run test
+```
+
 ### Docker compose (Recommended)
 _Requirement_ : Docker Engine
 1. Download release archive

compose.dev.yaml

@@ -19,8 +19,12 @@ services:
       - "5432:5432"
     volumes:
       - ./db/init.sql:/docker-entrypoint-initdb.d/init.sql
-    env_file:
-      - ./secrets/pg.env
+    environment:
+      POSTGRES_PASSWORD: ${PGPASSWORD}
+      POSTGRES_USER: ${PGUSER}
+      POSTGRES_DB: ${PGDATABASE}
+      PGPORT: ${PGPORT}
+      PGHOST: ${PGHOST}
 
 volumes:
   shareFile:

compose.test.yaml

@@ -2,24 +2,7 @@
 #
 # SPDX-License-Identifier: MIT
 
-services:
-  web:
-    build:
-      context: .
-      dockerfile: Dockerfile.test
-    container_name: ep2m2_web
-    ports:
-      - "80:3000"
-    volumes:
-      - shareFile:/shareFile
-      - /home/runner/work/EP2M2/EP2M2/test:/EP2M2/test
-    environment:
-      PGPASSWORD: ep2m2
-      PGUSER: ep2m2
-      PGPORT: 5432
-      PGDATABASE: ep2m2db
-
-
+services:      
   api:
     image: inraep2m2/service-p2m2tools-api:latest
     container_name: p2m2ToolsApi

test/server/tableClass.test.ts

@@ -16,25 +16,4 @@ describe("tableClass", async ()=>{
         expect(await(new Table("unknow"))).toThrowError(/^unknow table doesn't exist$/);
     });
 
-    // Define structure of compound table
-    const compound:{columnName:string, type:string, maxLength:number|null}[] = [
-        {columnName:"id", type:"integer", maxLength:null},
-        {columnName:"name", type:"character varying", maxLength:255},
-        {columnName:"url", type:"character varying", maxLength:255},
-        {columnName:"description", type:"text", maxLength:null},
-        {columnName:"archive_date", type:"timestamp with time zone",
-            maxLength:null},
-    ];
-    const compTable = await (new Table("compound"));
-    const compHeader = compTable.header;
-
-    test("Check number of header without id", ()=>{
-        expect(compHeader.length).toBe(compound.length - 1);
-    });
-
-
-    test("getHearder", () => {
-
-    });
-
 });