Rpadrino Methods in Ecology and Evolution Publication

This release is identical to 0.0.4, but is needed to trigger Zenodo archiving.

Rpadrino 0.0.4

This contains new features, and a couple changes for compatibility with ipmr 0.0.5.

Features

• Accessor functions for the Metadata table now have ipm_ids as names. This enables patterns for subsetting like this:

spps <- pdb_species_accepted(pdb)
ids  <- names(spps)[spps %in% c("Carpobrotus_spp", "Geum_radiatum")]
my_proto_ipms <- pdb_make_proto_ipm(pdb, ipm_id = ids)

• New vignettes on working with stochastic IPMs, and on the messages that are produced while building IPMs with pdb_make_proto_ipm() and pdb_make_ipm().

• pdb_report() now contains equations for each IPM using ipmr's make_ipm_report_body().

  • NB: This is currently unavailable for parameter set indexed IPMs.

0.0.3

Patch release to satisfy some of CRAN's Linux machines. There are no user-facing changes in this release.

Rpadrino v0.0.2

Patch release to satisfy CRAN's Solaris machine. There are no user-facing changes in this release.

Rpadrino v0.0.1

This is the first stable release of Rpadrino and is available on CRAN. Install with:

install.packages("Rpadrino")

It includes functionality to download the PADRINO IPM Database, explore and subset data, and rebuild IPMs. Additionally, it wraps ipmr methods to get and set vital rate expressions, IPM sub-kernel formulae, parameter values, and more. Explore all the features in the vignettes and report bugs on the Issue tracker in this repository.