pathogen-informatics
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primer3tools
primer3tools PublicDesign PCR primers and check uniqueness across multiple genomes
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vr-codebase
vr-codebase PublicForked from sanger-pathogens/vr-codebase
The overall codebase developed and used by the Vertebrate Resequencing group at the Sanger Institute
Perl
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iva
iva PublicForked from sanger-pathogens/iva
de novo virus assembler of Illumina paired reads
Python
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assembly-stats
assembly-stats PublicForked from sanger-pathogens/assembly-stats
Get assembly statistics from FASTA and FASTQ files
C++
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GeneDB-static
GeneDB-static PublicForked from sanger-pathogens/GeneDB-static
Static version of GeneDB website
HTML
Repositories
- gff_diff Public Forked from magnusmanske/gff_diff
A tool to generate a JSON diff between two GFF files, written in Rust
pathogen-informatics/gff_diff’s past year of commit activity - sanger-pathogens.github.io Public Forked from sanger-pathogens/sanger-pathogens.github.io
Summary of Sanger Pathogen's Repos
pathogen-informatics/sanger-pathogens.github.io’s past year of commit activity - gffmunger Public Forked from sanger-pathogens/gffmunger
Munges GFF3 files exported from Chado (http://www.gmod.org/) database to make them suitable for loading into WebApollo.
pathogen-informatics/gffmunger’s past year of commit activity - companion Public Forked from sanger-pathogens/companion
Pipeline for automatic eukaryotic parasite annotation
pathogen-informatics/companion’s past year of commit activity - Fastaq Public Forked from sanger-pathogens/Fastaq
Python3 scripts to manipulate FASTA and FASTQ files
pathogen-informatics/Fastaq’s past year of commit activity - Farm_blast Public Forked from sanger-pathogens/Farm_blast
Python3 module to run blast+ or blastall in parallel on an LSF compute farm
pathogen-informatics/Farm_blast’s past year of commit activity - Bio-RNASeq Public Forked from sanger-pathogens/Bio-RNASeq
The new Sanger Pathogen Informatics RNA Seq analysis pipeline
pathogen-informatics/Bio-RNASeq’s past year of commit activity
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