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Add error msg if coord NAs in make_mesh #365 #610

Add error msg if coord NAs in make_mesh #365

Add error msg if coord NAs in make_mesh #365 #610

Workflow file for this run

# For help debugging build failures open an issue on the RStudio community with the 'github-actions' tag.
# https://community.rstudio.com/new-topic?category=Package%20development&tags=github-actions
on:
push:
branches: [main, dev, fmesher2]
pull_request:
branches: [main, dev]
name: R-CMD-check
jobs:
R-CMD-check:
if: "! contains(github.event.head_commit.message, '[skip ci]')"
runs-on: ${{ matrix.config.os }}
name: ${{ matrix.config.os }} (${{ matrix.config.r }})
strategy:
fail-fast: false
matrix:
config:
- {os: windows-latest, r: 'release'}
- {os: macOS-latest, r: 'release'}
# - {os: ubuntu-latest, r: 'devel', http-user-agent: 'release'}
- {os: ubuntu-latest, r: 'release'}
# - {os: ubuntu-latest, r: 'oldrel-1'}
env:
R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
RSPM: ${{ matrix.config.rspm }}
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
R_KEEP_PKG_SOURCE: yes
steps:
- uses: actions/checkout@v2
- uses: r-lib/actions/setup-r@v2
with:
r-version: ${{ matrix.config.r }}
http-user-agent: ${{ matrix.config.http-user-agent }}
use-public-rspm: true
- uses: r-lib/actions/setup-pandoc@v2
- name: Query dependencies
run: |
install.packages('remotes')
saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version")
shell: Rscript {0}
- name: Cache R packages
if: runner.os != 'Windows'
uses: actions/cache@v2
with:
path: ${{ env.R_LIBS_USER }}
key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }}
restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-
- name: Install system dependencies
if: runner.os == 'Linux'
run: |
while read -r cmd
do
eval sudo $cmd
done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "20.04"))')
- name: Install dependencies macOS
if: runner.os == 'macOS'
run: |
remotes::install_deps(dependencies = TRUE)
remotes::install_cran("sf")
remotes::install_cran("rcmdcheck")
remotes::install_cran("textshaping")
remotes::install_github("pbs-assess/sdmTMBextra")
install.packages("Matrix", type = "source")
install.packages("TMB", type = "source")
shell: Rscript {0}
- name: Install dependencies Ubuntu
if: runner.os == 'Linux'
run: |
remotes::install_deps(dependencies = TRUE)
remotes::install_cran("knitr")
remotes::install_cran("rmarkdown")
remotes::install_cran("rcmdcheck")
remotes::install_github("pbs-assess/sdmTMBextra")
install.packages("Matrix", type = "source")
install.packages("TMB", type = "source")
shell: Rscript {0}
- name: Install dependencies Windows
if: runner.os == 'Windows'
run: |
remotes::install_deps(dependencies = TRUE)
remotes::install_cran("knitr")
remotes::install_cran("rmarkdown")
remotes::install_cran("rcmdcheck")
remotes::install_github("pbs-assess/sdmTMBextra")
install.packages("Matrix", type = "source")
install.packages("TMB", type = "source")
shell: Rscript {0}
- name: Check
env:
_R_CHECK_CRAN_INCOMING_REMOTE_: false
_R_CHECK_FORCE_SUGGESTS_: false
run: rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran", "--ignore-vignettes", "--no-build-vignettes"), build_args = c("--no-manual", "--no-build-vignettes"), error_on = "error", check_dir = "check")
shell: Rscript {0}
- name: Upload check results
if: failure()
uses: actions/upload-artifact@main
with:
name: ${{ runner.os }}-r${{ matrix.config.r }}-results
path: check