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fix: assign new value from scope function
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@pcvolkmer
pcvolkmer committed Mar 12, 2024
1 parent af714f7 commit 12eb1fe
Showing 1 changed file with 52 additions and 50 deletions.
102 changes: 52 additions & 50 deletions src/main/kotlin/dev/dnpm/etl/processor/pseudonym/extensions.kt
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Original file line number Diff line number Diff line change
Expand Up @@ -74,150 +74,152 @@ infix fun MtbFile.anonymizeContentWith(pseudonymizeService: PseudonymizeService)
}

this.episode?.apply {
id?.apply { anonymize(this) }
id = id?.let {
anonymize(it)
}
}
this.carePlans?.onEach { carePlan ->
carePlan?.apply {
id?.apply { anonymize(this) }
diagnosis?.apply { anonymize(this) }
geneticCounsellingRequest?.apply { anonymize(this) }
rebiopsyRequests = rebiopsyRequests.map { it?.apply { anonymize(this) } }
recommendations = recommendations.map { it?.apply { anonymize(this) } }
studyInclusionRequests = studyInclusionRequests.map { it?.apply { anonymize(this) } }
id = id?.let { anonymize(it) }
diagnosis = diagnosis?.let { anonymize(it) }
geneticCounsellingRequest = geneticCounsellingRequest?.let { anonymize(it) }
rebiopsyRequests = rebiopsyRequests.map { it?.let { anonymize(it) } }
recommendations = recommendations.map { it?.let { anonymize(it) } }
studyInclusionRequests = studyInclusionRequests.map { it?.let { anonymize(it) } }
}
}
this.claims?.onEach { claim ->
claim?.apply {
id?.apply { anonymize(this) }
therapy?.apply { anonymize(this) }
id = id?.let { anonymize(it) }
therapy = therapy?.let { anonymize(it) }
}
}
this.claimResponses?.onEach { claimResponse ->
claimResponse?.apply {
id?.apply { anonymize(this) }
claim?.apply { anonymize(this) }
id = id?.let { anonymize(it) }
claim = claim?.let { anonymize(it) }
}
}
this.consent?.apply {
id?.apply { anonymize(this) }
id = id?.let { anonymize(it) }
}
this.diagnoses?.onEach { diagnosis ->
diagnosis?.apply {
id?.apply { anonymize(this) }
histologyResults = histologyResults?.map { it?.apply { anonymize(this) } }
id = id?.let { anonymize(it) }
histologyResults = histologyResults?.map { it?.let { anonymize(it) } }
}
}
this.ecogStatus?.onEach { ecogStatus ->
ecogStatus?.apply {
id?.apply { anonymize(this) }
id = id?.let { anonymize(it) }
}
}
this.familyMemberDiagnoses?.onEach { familyMemberDiagnosis ->
familyMemberDiagnosis?.apply {
id?.apply { anonymize(this) }
id = id?.let { anonymize(it) }
}
}
this.geneticCounsellingRequests?.onEach { geneticCounsellingRequest ->
geneticCounsellingRequest?.apply {
id?.apply { anonymize(this) }
id = id?.let { anonymize(it) }
}
}
this.histologyReevaluationRequests?.onEach { histologyReevaluationRequest ->
histologyReevaluationRequest?.apply {
id?.apply { anonymize(this) }
specimen?.apply { anonymize(this) }
id = id?.let { anonymize(it) }
specimen = specimen?.let { anonymize(it) }
}
}
this.histologyReports?.onEach { histologyReport ->
histologyReport?.apply {
id?.apply { anonymize(this) }
specimen?.apply { anonymize(this) }
id = id?.let { anonymize(it) }
specimen = specimen?.let { anonymize(it) }
tumorMorphology?.apply {
id?.apply { anonymize(this) }
specimen?.apply { anonymize(this) }
id = id?.let { anonymize(it) }
specimen = specimen?.let { anonymize(it) }
}
tumorCellContent?.apply {
id?.apply { anonymize(this) }
specimen?.apply { anonymize(this) }
id = id?.let { anonymize(it) }
specimen = specimen?.let { anonymize(it) }
}
}
}
this.lastGuidelineTherapies?.onEach { lastGuidelineTherapy ->
lastGuidelineTherapy?.apply {
id?.apply { anonymize(this) }
diagnosis?.apply { anonymize(this) }
id = id?.let { anonymize(it) }
diagnosis = diagnosis?.let { anonymize(it) }
}
}
this.molecularPathologyFindings?.onEach { molecularPathologyFinding ->
molecularPathologyFinding?.apply {
id?.apply { anonymize(this) }
specimen?.apply { anonymize(this) }
id = id?.let { anonymize(it) }
specimen = specimen?.let { anonymize(it) }
}
}
this.molecularTherapies?.onEach { molecularTherapy ->
molecularTherapy?.apply {
history?.onEach { history ->
history?.apply {
id?.apply { anonymize(this) }
basedOn?.apply { anonymize(this) }
id = id?.let { anonymize(it) }
basedOn = basedOn?.let { anonymize(it) }
}
}
}
}
this.ngsReports?.onEach { ngsReport ->
ngsReport?.apply {
id?.apply { anonymize(this) }
specimen?.apply { anonymize(this) }
id = id?.let { anonymize(it) }
specimen = specimen?.let { anonymize(it) }
tumorCellContent?.apply {
id?.apply { anonymize(this) }
specimen?.apply { anonymize(this) }
id = id?.let { anonymize(it) }
specimen = specimen?.let { anonymize(it) }
}
simpleVariants?.onEach { simpleVariant ->
simpleVariant?.apply {
id?.apply { anonymize(this) }
id = id?.let { anonymize(it) }
}
}
}
}
this.previousGuidelineTherapies?.onEach { previousGuidelineTherapy ->
previousGuidelineTherapy?.apply {
id?.apply { anonymize(this) }
diagnosis?.apply { anonymize(this) }
this.medication.forEach { medication ->
id = id?.let { anonymize(it) }
diagnosis = diagnosis?.let { anonymize(it) }
medication.forEach { medication ->
medication?.apply {
id?.apply { anonymize(this) }
id = id?.let { anonymize(it) }
}
}
}
}
this.rebiopsyRequests?.onEach { rebiopsyRequest ->
rebiopsyRequest?.apply {
id?.apply { anonymize(this) }
specimen?.apply { anonymize(this) }
id = id?.let { anonymize(it) }
specimen = specimen?.let { anonymize(it) }
}
}
this.recommendations?.onEach { recommendation ->
recommendation?.apply {
id?.apply { anonymize(this) }
diagnosis?.apply { anonymize(this) }
ngsReport?.apply { anonymize(this) }
id = id?.let { anonymize(it) }
diagnosis = diagnosis?.let { anonymize(it) }
ngsReport = ngsReport?.let { anonymize(it) }
}
}
this.responses?.onEach { response ->
response?.apply {
id?.apply { anonymize(this) }
therapy?.apply { anonymize(this) }
id = id?.let { anonymize(it) }
therapy = therapy?.let { anonymize(it) }
}
}
this.studyInclusionRequests?.onEach { studyInclusionRequest ->
studyInclusionRequest?.apply {
id?.apply { anonymize(this) }
reason?.apply { anonymize(this) }
id = id?.let { anonymize(it) }
reason = reason?.let { anonymize(it) }
}
}
this.specimens?.onEach { specimen ->
specimen?.apply {
id?.apply { anonymize(this) }
id = id?.let { anonymize(it) }
}
}
}

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