feat: add page that shows transformation configuration

pcvolkmer · Dec 4, 2023 · 3e45de5 · 3e45de5
1 parent 7f54efe
commit 3e45de5
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diff --git a/src/main/kotlin/dev/dnpm/etl/processor/services/TransformationService.kt b/src/main/kotlin/dev/dnpm/etl/processor/services/TransformationService.kt
@@ -51,9 +51,13 @@ class TransformationService(private val objectMapper: ObjectMapper, private val
         return objectMapper.readValue(json, MtbFile::class.java)
     }
 
+    fun getTransformations(): List<Transformation> {
+        return this.transformations
+    }
+
 }
 
-class Transformation private constructor(internal val path: String) {
+class Transformation private constructor(val path: String) {
 
     lateinit var existingValue: Any
         private set

diff --git a/src/main/kotlin/dev/dnpm/etl/processor/web/TransformationController.kt b/src/main/kotlin/dev/dnpm/etl/processor/web/TransformationController.kt
@@ -0,0 +1,41 @@
+/*
+ * This file is part of ETL-Processor
+ *
+ * Copyright (c) 2023  Comprehensive Cancer Center Mainfranken, Datenintegrationszentrum Philipps-Universität Marburg and Contributors
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Affero General Public License as published
+ * by the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU Affero General Public License for more details.
+ *
+ * You should have received a copy of the GNU Affero General Public License
+ * along with this program.  If not, see <https://www.gnu.org/licenses/>.
+ */
+
+package dev.dnpm.etl.processor.web
+
+import dev.dnpm.etl.processor.services.TransformationService
+import org.springframework.stereotype.Controller
+import org.springframework.ui.Model
+import org.springframework.web.bind.annotation.GetMapping
+import org.springframework.web.bind.annotation.RequestMapping
+
+@Controller
+@RequestMapping(path = ["transformations"])
+class TransformationController(
+    private val transformationService: TransformationService
+) {
+
+    @GetMapping
+    fun index(model: Model): String {
+        model.addAttribute("transformations", transformationService.getTransformations())
+
+        return "transformations"
+    }
+
+}
diff --git a/src/main/resources/static/style.css b/src/main/resources/static/style.css
@@ -86,6 +86,10 @@ nav > ul > li:first-of-type {
     text-decoration: none;
 }
 
+.centered {
+    text-align: center;
+}
+
 main {
     margin: 0 auto;
     max-width: 1140px;
@@ -209,6 +213,25 @@ td.bg-gray, th.bg-gray {
     color: white;
 }
 
+.bg-path {
+    background: var(--bg-gray-op);
+}
+
+.bg-from {
+    background: var(--bg-red-op);
+}
+
+.bg-to {
+    background: var(--bg-green-op);
+}
+
+.bg-path, .bg-from, .bg-to {
+    padding: 0.25rem 0.5rem;
+    border-radius: 3px;
+
+    font-family: monospace;
+}
+
 td.bg-shaded, th.bg-shaded {
     background: repeating-linear-gradient(140deg, white, #e5e5f5 4px, white 8px);
 }

diff --git a/src/main/resources/templates/fragments.html b/src/main/resources/templates/fragments.html
@@ -10,6 +10,7 @@
             <ul>
                 <li><a th:href="@{/}">Übersicht</a></li>
                 <li><a th:href="@{/statistics}">Statistiken</a></li>
+                <li><a th:href="@{/transformations}">Transformationen</a></li>
             </ul>
         </nav>
     </div>

diff --git a/src/main/resources/templates/transformations.html b/src/main/resources/templates/transformations.html
@@ -0,0 +1,47 @@
+<!DOCTYPE html>
+<html lang="de" xmlns:th="http://www.thymeleaf.org">
+<head>
+    <meta charset="UTF-8">
+    <title>ETL-Prozessor</title>
+    <link rel="stylesheet" th:href="@{/style.css}" />
+</head>
+<body>
+    <div th:replace="~{fragments.html :: nav}"></div>
+    <main>
+        <h1>Transformationen</h1>
+
+        <h2>Syntax</h2>
+        Hier einige Beispiele zum Syntax des JSON-Path
+        <ul>
+            <li style="padding: 0.6rem 0;"><span class="bg-path">diagnoses[*].icdO3T.version</span>: Ersetze die ICD-O3T-Version in allen Diagnosen, z.B. zur Version der deutschen Übersetzung</li>
+            <li style="padding: 0.6rem 0;"><span class="bg-path">patient.gender</span>: Ersetze das Geschlecht des Patienten, z.B. in das von bwHC verlangte Format</li>
+        </ul>
+
+        <h2>Konfigurierte Transformationen</h2>
+        <p>
+            Hier sehen Sie eine Übersicht der konfigurierten Transformationen.
+        </p>
+
+        <table>
+            <thead>
+            <tr>
+                <th>JSON-Path</th>
+                <th>Transformation von &rArr; nach</th>
+            </tr>
+            </thead>
+            <tbody>
+            <tr th:each="transformation : ${transformations}">
+                <td>
+                    <span class="bg-path" title="Ersetze Wert(e) an dieser Stelle im MTB-File">[[ ${transformation.path} ]]</span>
+                </td>
+                <td>
+                    <span class="bg-from" title="Ersetze immer dann, wenn dieser Wert enthalten ist">[[ ${transformation.existingValue} ]]</span>
+                    <strong>&rArr;</strong>
+                    <span class="bg-to" title="Ersetze durch diesen Wert">[[ ${transformation.newValue} ]]</span>
+                </td>
+            </tr>
+            </tbody>
+        </table>
+    </main>
+</body>
+</html>
-Original file line number
+Diff line change
@@ Expand Up / @@ -10,6 +10,7 @@ @@
                 <ul>
                     <li><a th:href="@{/}">Übersicht</a></li>
                     <li><a th:href="@{/statistics}">Statistiken</a></li>
+                    <li><a th:href="@{/transformations}">Transformationen</a></li>
                 </ul>
             </nav>
         </div>
@@ Expand Down @@