Manual manifest update (issue #19)

README.md

@@ -26,7 +26,7 @@ We welcome contributions of new primer schemes! We're working to make this proce
 
 2. Create a directory named `schemename-v1` containing a text file `info.yml` containing:
    ```yaml
-   schema_version: 2-0-0
+   schema_version: 0.9.0
    name: schemename-v1
    organism: sars-cov-2
    developers:
@@ -39,18 +39,19 @@ We welcome contributions of new primer schemes! We're working to make this proce
 3. Copy your scheme's BED file into this directory, naming it `primer.bed`
 
 4. Copy your scheme's reference sequence into this directory, naming it `reference.fasta` 
+5. Optionally run `primaschema build schemename-v1/` to create a finished scheme bundle  
 
 5. Either **open a pull request** adding your scheme directory (e.g. inside `sars-cov-2/schemename/v1`), or else **open a GitHub issue** attaching a zip file containing your scheme.
 
 
 
 ## Tooling
 
-The companion tool [Primaschema](https://github.com/pha4ge/primaschema) can be used to validate scheme definitions and automatically checks this repository via GitHub Actions. Primaschema adds primer and reference sequence checksums to `info.yml` at build time to help catch identical primer schemes. A six column scheme.bed file is also generated at build time for legacy tool compatibility.
+The companion tool [Primaschema](https://github.com/pha4ge/primaschema) can be used to validate scheme definitions and automatically checks and updates this repository via GitHub Actions. Primaschema adds primer and reference sequence checksums to `info.yml` at build time to help catch identical primer schemes. A six column scheme.bed file is also generated at build time for legacy compatibility.
 
 
 
-## Documented schemes (23)
+## Documented schemes (24)
 
 ### SARS-CoV-2 (22)
 
@@ -83,3 +84,6 @@ The companion tool [Primaschema](https://github.com/pha4ge/primaschema) can be u
 
 - `yale-v3`
 
+### NiV (1)
+
+- `nipah-v1`

index.yml

@@ -12,6 +12,10 @@ organisms:
   display_name: MPXV
   aliases:
   - Monkeypox virus
+- organism: niv
+  display_name: NiV
+  aliases:
+  - Nipah virus
 schemes:
 - family: artic
   organism: sars-cov-2
@@ -52,6 +56,10 @@ schemes:
     display_name: artic-v5.2.0_400
     version: v5.2.0_400
     repository: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/artic/v5.2.0_400
+  - name: artic-v5.3.2_400
+    display_name: artic-v5.3.2_400
+    version: v5.3.2_400
+    repository: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/artic/v5.3.2_400
 - family: eden
   organism: sars-cov-2
   versions:
@@ -90,6 +98,13 @@ schemes:
     display_name: midnight-v2
     version: v2
     repository: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/midnight/v2
+- family: nipah
+  organism: niv
+  versions:
+  - name: nipah-v1
+    display_name: nipah-v1
+    version: v1
+    repository: https://github.com/pha4ge/primer-schemes/tree/main/niv/nipah/v1
 - family: varskip
   organism: sars-cov-2
   versions:
@@ -110,7 +125,7 @@ schemes:
     version: vss2b
     repository: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/varskip/vss2a
 - family: yale
-  organism: MPXV
+  organism: mpxv
   versions:
   - name: yale-v3
     display_name: yale-v3

sars-cov-2/midnight/ont-v3/info.yml

@@ -10,7 +10,7 @@ vendors:
 - organisation_name: Oxford Nanopore Technologies
   kit_name: MRT001.30
 amplicon_size: 1200
-repository_url: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/midnight/v3
+repository_url: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/midnight/ont-v3
 citations:
 - https://dx.doi.org/10.17504/protocols.io.bwyppfvn
 notes: