Fixed bugs related to batch mode output files displaying only last sa…

…mple results instead of results from All samples. Also added automatic clceaner for the main output files to prevent excesive file output growth especially of Blastn results

ectyper/predictionFunctions.py

@@ -367,7 +367,7 @@ def predict_serotype(blast_output_file, ectyper_dict, args):
     # Make prediction for each genome based on blast output
     for genome_name, per_genome_df in output_df.groupby('genome_name'):
         predictions_dict[genome_name] = get_prediction(per_genome_df)
-    LOG.info(f"Serotype prediction successfully completed for {genome_name}")
+        LOG.info(f"Serotype prediction successfully completed for {genome_name}")
     LOG.debug("Predictions dict:\n{}".format(predictions_dict))
 
     return predictions_dict, output_df