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--longreads option added for FASTQ long reads inputs such as PacBio, …
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…ONT, etc. Gives better mapping results
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kbessonov1984 committed Nov 7, 2024
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Expand Up @@ -123,7 +123,7 @@ optional arguments:
-i INPUT, --input INPUT
Location of E. coli genome file(s). Can be a single file, a comma-
separated list of files, or a directory
--longreads Enable for raw long reads FASTQ inputs (ONT, PacBio, other sequencing platforms). [default False]
--longreads Enable for raw long reads FASTQ inputs (ONT, PacBio, other platforms) [default False]
-c CORES, --cores CORES
The number of cores to run ectyper with
-opid PERCENTIDENTITYOTYPE, --percentIdentityOtype PERCENTIDENTITYOTYPE
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