Release V2.0.0 #94
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Release V2.0.0 #94
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…D to be run always, before only was possible with --verify key
…ency due to delete param not being present only starting python 3.12
…ociated with a value
…pes covering EAEC and DAEC
…samples and added full length STX1 and STX2 sequences to database, homogenized gene names
…oved multicore performance on single sample
…essages when file list is provided listing missing files
…ectories are allowed now to be specified
… other files in a pool not being analyzed.
…mple results instead of results from All samples. Also added automatic clceaner for the main output files to prevent excesive file output growth especially of Blastn results
…mple results instead of results from All samples. Also added automatic clceaner for the main output files to prevent excesive file output growth especially of Blastn results
…es ID MASH database now hosted in Zenodo.org
…with the stx_contigs_num field
…nces to each record and adding subunit coordinates and intergenic region of shiga toxin records
…nces to each record and adding subunit coordinates and intergenic region of shiga toxin records
…nputs. Added solution to issue #87
…f and top reference accession id
…ONT, etc. Gives better mapping results
…ONT, etc. Gives better mapping results
…ONT, etc. Gives better mapping results
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The release was extensively tested internally merging into master branch |
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This is a significant update to ECTyper v1.0.0 functionality with the 3 new features
--longreadnew argument)