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211 new table table 33 with gtsummary #212

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merged 18 commits into from
Apr 24, 2024

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aassuied-ps
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Closes #211

@aassuied-ps aassuied-ps linked an issue Mar 14, 2024 that may be closed by this pull request
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github-actions bot commented Mar 14, 2024

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Code Coverage Summary

Filename            Stmts    Miss  Cover    Missing
----------------  -------  ------  -------  ---------
R/fda-fig_01.R         75       0  100.00%
R/fda-fig_02.R         75       0  100.00%
R/fda-fig_14.R        115       0  100.00%
R/fda-table_02.R      166       0  100.00%
R/fda-table_03.R       35       0  100.00%
R/fda-table_04.R       63       0  100.00%
R/fda-table_05.R       61       0  100.00%
R/fda-table_06.R       76       0  100.00%
R/fda-table_07.R       35       0  100.00%
R/fda-table_08.R       46       0  100.00%
R/fda-table_09.R      333       4  98.80%   254-258
R/fda-table_10.R       26       0  100.00%
R/fda-table_11.R       42       0  100.00%
R/fda-table_12.R       40       0  100.00%
R/fda-table_13.R       20       0  100.00%
R/fda-table_14.R       27       0  100.00%
R/fda-table_15.R       32       0  100.00%
R/fda-table_16.R       32       0  100.00%
R/fda-table_17.R       32       0  100.00%
R/fda-table_18.R       32       0  100.00%
R/fda-table_20.R       71       0  100.00%
R/fda-table_21.R       78       0  100.00%
R/fda-table_22.R       77       0  100.00%
R/fda-table_32.R       94       0  100.00%
R/fda-table_33.R       95       0  100.00%
R/fda-table_34.R       30       0  100.00%
R/fda-table_35.R       23       1  95.65%   58
R/fda-table_36.R       30       1  96.67%   70
R/fda-table_38.R       39       0  100.00%
R/utils.R              28       0  100.00%
TOTAL                1928       6  99.69%

Diff against main

Filename            Stmts    Miss  Cover
----------------  -------  ------  --------
R/fda-fig_01.R         +1       0  +100.00%
R/fda-fig_02.R         +1       0  +100.00%
R/fda-fig_14.R       +115       0  +100.00%
R/fda-table_09.R     +119      +4  -1.20%
R/fda-table_22.R      +77       0  +100.00%
R/fda-table_32.R      +19       0  +100.00%
R/fda-table_33.R      +65       0  +100.00%
R/fda-table_36.R      +30      +1  +96.67%
R/fda-table_38.R      +39       0  +100.00%
TOTAL                +466      +5  -0.24%

Results for commit: 86ae4d8

Minimum allowed coverage is 80%

♻️ This comment has been updated with latest results

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github-actions bot commented Mar 14, 2024

Unit Test Performance Difference

Test Suite $Status$ Time on main $±Time$ $±Tests$ $±Skipped$ $±Failures$ $±Errors$
fda-table_32 💔 $3.18$ $+1.66$ $+3$ $+1$ $0$ $0$
fda-table_33 💔 $1.32$ $+3.06$ $+9$ $+3$ $0$ $0$
Additional test case details
Test Suite $Status$ Time on main $±Time$ Test Case
fda-table_32 👶 $+1.46$ Table_32_gtsum_generation_missing_values_and_ADSL
fda-table_33 👶 $+1.08$ Table_33_gtsum_generation_missing_values_and_ADSL
fda-table_33 👶 $+1.07$ Table_33_gtsum_generation_works_with_custom_values
fda-table_33 👶 $+0.85$ Table_33_gtsum_generation_works_with_default_values

Results for commit 1e563e7

♻️ This comment has been updated with latest results.

@aassuied-ps
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I'm doing a few ajustements on tables 33 and 32.

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github-actions bot commented Mar 29, 2024

Unit Tests Summary

  1 files   29 suites   1m 12s ⏱️
128 tests 128 ✅   0 💤 0 ❌
465 runs  345 ✅ 120 💤 0 ❌

Results for commit 86ae4d8.

♻️ This comment has been updated with latest results.

Handle missing data properly. Use alt_counts_df argument instead of adsl.
@edelarua edelarua self-assigned this Apr 24, 2024
@edelarua edelarua self-requested a review April 24, 2024 19:44
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Lgtm! I made a few other updates to fix failing tests but your work all looks great. Thanks Alex!!

@edelarua edelarua merged commit 62352b6 into main Apr 24, 2024
24 checks passed
@edelarua edelarua deleted the 211-new-table-table-33-with-gtsummary branch April 24, 2024 23:36
huanlugwu added a commit that referenced this pull request May 29, 2024
* 201 new figure figure 14 (#209)

* First draft

First draft (not fully working)

* New push

Now the results are correct. Colors in the table are missing and the order of the group is not correct.

* Delete width= in geom_errorbar

To avoid warning `position_dodge()` requires non-overlapping x intervals

* Update

Put example in comments @examples

* Update fda-fig_14 and argument convention

* tests

Update setup.R to add ggplot2

* quarto page

* _quarto.yml and NEWS.md

* typo

* Put PARAMCD in code mode

* Remove id_var, add visit_var, reverse order of table rows

* [skip actions] Restyle files

* Add to index

* [skip actions] Restyle files

* Empty commit

* Fix unrelated broken template

* [skip actions] Roxygen Man Pages Auto Update

* Empty commit

* Fix lint

* Fix imports/exports

* Update template

---------

Co-authored-by: Emily de la Rua <emily.de_la_rua@contractors.roche.com>
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: 27856297+dependabot-preview[bot]@users.noreply.github.com <27856297+dependabot-preview[bot]@users.noreply.github.com>

* 196-new-table-38 (#204)

* 1st commitment for all documents

* [skip actions] Restyle files

* [skip actions] Roxygen Man Pages Auto Update

* Fix table 35 title

* Update index

* Update label indentation

---------

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: 27856297+dependabot-preview[bot]@users.noreply.github.com <27856297+dependabot-preview[bot]@users.noreply.github.com>
Co-authored-by: Emily de la Rua <emily.de_la_rua@contractors.roche.com>

* 195 new table table 36 (#208)

* Add make_table_36

* Add tests for make_table_36

* Addd quarto page for make_table_36

* [skip actions] Restyle files

* Update NEWS file

* Remove scda from table 22

* Solve lintr marks for table 22

* empty commit

* Update WORDLIST

---------

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: Abinaya Yogasekaram <73252787+ayogasekaram@users.noreply.github.com>
Co-authored-by: ayogasekaram <abinaya.yogasekaram@contractors.roche.com>
Co-authored-by: Emily de la Rua <emily.de_la_rua@contractors.roche.com>

* 105 table 09 tplyr (#192)

* Prepare first raw tplyr table including risk difference columns

* Table 9 Tplyr: Update header string in case risk difference columns are expected

* Table 9 Tplyr: Add parameter for overall column

* Tab 9 Tplyr: Introduce soc_var parameter

* Add show_colcounts and prune functionality

* Clean comments

* Replace remaining hard-coded variable names by parameters

* Add option to return a gt_table object

* Add checkmate checks

* Allow for both, character and factor, since tplyr seems to prefer character

* Update roxygen documentation

* Add make_table_09_tplyr() to web page

* Establish first test cases

* Add test for correct column header assignment (make_table_09_tplyr)

* Add column ordering based on arm order for make_table_09_tplyr

* Add final tests and clean

* [skip actions] Restyle files

* Solve lintr markers

* Update after devtools::check()

* [skip actions] Restyle files

* [skip actions] Roxygen Man Pages Auto Update

* Restart github check by code modification

* Update example data frpm scda to random.cdisc.data

* [skip actions] Restyle files

* [skip actions] Roxygen Man Pages Auto Update

* Set RoxygenNote to 7.3.0 as required by GitHub action

* Fix make_table_09_tplyr() row order

* Add scda to 'Suggests' since table 22 still includes it in the example and tests

* Move scda from Suggests to Imports since table 22 quarto page relies on it as well...

* Replace scda w/ random.cdisc.data for table 22 examples and tests

* [skip actions] Roxygen Man Pages Auto Update

* Restrict Tplyr version to <= 1.1.0 until newly introduced incompatibilities w/ higher versions are solved

* Restrict to Tplyr version 1.1.0

* Remove version restriction for Tplyr

* Deactivate risk difference feature until {Tplyr} issue is solved

* Re-document

* [skip style] [skip vbump] Restyle files

---------

Co-authored-by: mattkorb <korbinian.matthias@boehringer-ingelheim.com>
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: 27856297+dependabot-preview[bot]@users.noreply.github.com <27856297+dependabot-preview[bot]@users.noreply.github.com>
Co-authored-by: ayogasekaram <abinaya.yogasekaram@contractors.roche.com>

* Update boehringer company logo on website (#214)

* [skip actions] Bump version to 0.1.0.9054

* 211 new table table 33 with gtsummary (#212)

Closes #211

* [skip actions] Bump version to 0.1.0.9055

* 205_BUG_fix _make_table_34 Issue (#215)

* Calculate counts for FMQ levels.
Updated test file and Qualt file accordingly.

* [skip style] [skip vbump] Restyle files

* [skip roxygen] [skip vbump] Roxygen Man Pages Auto Update

* lint R check

* [skip style] [skip vbump] Restyle files

---------

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: 27856297+dependabot-preview[bot]@users.noreply.github.com <27856297+dependabot-preview[bot]@users.noreply.github.com>

---------

Co-authored-by: Alex Assuied <123543888+aassuied-ps@users.noreply.github.com>
Co-authored-by: Emily de la Rua <emily.de_la_rua@contractors.roche.com>
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: 27856297+dependabot-preview[bot]@users.noreply.github.com <27856297+dependabot-preview[bot]@users.noreply.github.com>
Co-authored-by: YoshitoKoujin <123349854+YoshitoKoujin@users.noreply.github.com>
Co-authored-by: Korbinian Matthias <123395522+mattkorb@users.noreply.github.com>
Co-authored-by: Abinaya Yogasekaram <73252787+ayogasekaram@users.noreply.github.com>
Co-authored-by: ayogasekaram <abinaya.yogasekaram@contractors.roche.com>
Co-authored-by: Jessica Knizia <85986258+jknizia@users.noreply.github.com>
Co-authored-by: mattkorb <korbinian.matthias@boehringer-ingelheim.com>
Co-authored-by: edelarua <edelarua@users.noreply.github.com>
huanlugwu added a commit that referenced this pull request Aug 23, 2024
* update branch 207 (#222)

* 201 new figure figure 14 (#209)

* First draft

First draft (not fully working)

* New push

Now the results are correct. Colors in the table are missing and the order of the group is not correct.

* Delete width= in geom_errorbar

To avoid warning `position_dodge()` requires non-overlapping x intervals

* Update

Put example in comments @examples

* Update fda-fig_14 and argument convention

* tests

Update setup.R to add ggplot2

* quarto page

* _quarto.yml and NEWS.md

* typo

* Put PARAMCD in code mode

* Remove id_var, add visit_var, reverse order of table rows

* [skip actions] Restyle files

* Add to index

* [skip actions] Restyle files

* Empty commit

* Fix unrelated broken template

* [skip actions] Roxygen Man Pages Auto Update

* Empty commit

* Fix lint

* Fix imports/exports

* Update template

---------

Co-authored-by: Emily de la Rua <emily.de_la_rua@contractors.roche.com>
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: 27856297+dependabot-preview[bot]@users.noreply.github.com <27856297+dependabot-preview[bot]@users.noreply.github.com>

* 196-new-table-38 (#204)

* 1st commitment for all documents

* [skip actions] Restyle files

* [skip actions] Roxygen Man Pages Auto Update

* Fix table 35 title

* Update index

* Update label indentation

---------

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: 27856297+dependabot-preview[bot]@users.noreply.github.com <27856297+dependabot-preview[bot]@users.noreply.github.com>
Co-authored-by: Emily de la Rua <emily.de_la_rua@contractors.roche.com>

* 195 new table table 36 (#208)

* Add make_table_36

* Add tests for make_table_36

* Addd quarto page for make_table_36

* [skip actions] Restyle files

* Update NEWS file

* Remove scda from table 22

* Solve lintr marks for table 22

* empty commit

* Update WORDLIST

---------

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: Abinaya Yogasekaram <73252787+ayogasekaram@users.noreply.github.com>
Co-authored-by: ayogasekaram <abinaya.yogasekaram@contractors.roche.com>
Co-authored-by: Emily de la Rua <emily.de_la_rua@contractors.roche.com>

* 105 table 09 tplyr (#192)

* Prepare first raw tplyr table including risk difference columns

* Table 9 Tplyr: Update header string in case risk difference columns are expected

* Table 9 Tplyr: Add parameter for overall column

* Tab 9 Tplyr: Introduce soc_var parameter

* Add show_colcounts and prune functionality

* Clean comments

* Replace remaining hard-coded variable names by parameters

* Add option to return a gt_table object

* Add checkmate checks

* Allow for both, character and factor, since tplyr seems to prefer character

* Update roxygen documentation

* Add make_table_09_tplyr() to web page

* Establish first test cases

* Add test for correct column header assignment (make_table_09_tplyr)

* Add column ordering based on arm order for make_table_09_tplyr

* Add final tests and clean

* [skip actions] Restyle files

* Solve lintr markers

* Update after devtools::check()

* [skip actions] Restyle files

* [skip actions] Roxygen Man Pages Auto Update

* Restart github check by code modification

* Update example data frpm scda to random.cdisc.data

* [skip actions] Restyle files

* [skip actions] Roxygen Man Pages Auto Update

* Set RoxygenNote to 7.3.0 as required by GitHub action

* Fix make_table_09_tplyr() row order

* Add scda to 'Suggests' since table 22 still includes it in the example and tests

* Move scda from Suggests to Imports since table 22 quarto page relies on it as well...

* Replace scda w/ random.cdisc.data for table 22 examples and tests

* [skip actions] Roxygen Man Pages Auto Update

* Restrict Tplyr version to <= 1.1.0 until newly introduced incompatibilities w/ higher versions are solved

* Restrict to Tplyr version 1.1.0

* Remove version restriction for Tplyr

* Deactivate risk difference feature until {Tplyr} issue is solved

* Re-document

* [skip style] [skip vbump] Restyle files

---------

Co-authored-by: mattkorb <korbinian.matthias@boehringer-ingelheim.com>
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: 27856297+dependabot-preview[bot]@users.noreply.github.com <27856297+dependabot-preview[bot]@users.noreply.github.com>
Co-authored-by: ayogasekaram <abinaya.yogasekaram@contractors.roche.com>

* Update boehringer company logo on website (#214)

* [skip actions] Bump version to 0.1.0.9054

* 211 new table table 33 with gtsummary (#212)

Closes #211

* [skip actions] Bump version to 0.1.0.9055

* 205_BUG_fix _make_table_34 Issue (#215)

* Calculate counts for FMQ levels.
Updated test file and Qualt file accordingly.

* [skip style] [skip vbump] Restyle files

* [skip roxygen] [skip vbump] Roxygen Man Pages Auto Update

* lint R check

* [skip style] [skip vbump] Restyle files

---------

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: 27856297+dependabot-preview[bot]@users.noreply.github.com <27856297+dependabot-preview[bot]@users.noreply.github.com>

---------

Co-authored-by: Alex Assuied <123543888+aassuied-ps@users.noreply.github.com>
Co-authored-by: Emily de la Rua <emily.de_la_rua@contractors.roche.com>
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: 27856297+dependabot-preview[bot]@users.noreply.github.com <27856297+dependabot-preview[bot]@users.noreply.github.com>
Co-authored-by: YoshitoKoujin <123349854+YoshitoKoujin@users.noreply.github.com>
Co-authored-by: Korbinian Matthias <123395522+mattkorb@users.noreply.github.com>
Co-authored-by: Abinaya Yogasekaram <73252787+ayogasekaram@users.noreply.github.com>
Co-authored-by: ayogasekaram <abinaya.yogasekaram@contractors.roche.com>
Co-authored-by: Jessica Knizia <85986258+jknizia@users.noreply.github.com>
Co-authored-by: mattkorb <korbinian.matthias@boehringer-ingelheim.com>
Co-authored-by: edelarua <edelarua@users.noreply.github.com>

* with fda-fig_03 added

* [skip style] [skip vbump] Restyle files

* switch from {survminer} to {ggsurvfit}

* [skip style] [skip vbump] Restyle files

* Clean up aesthetics

* Import ggsurvfit

* Update tests

* Refresh template table

* Fix lint

* Fix spelling

* Load data in template

* Use DCSREAS instead of DCTREAS in figure 3 (and table 4)

* Fix R CMD Check note

* Fix remaining documentation

---------

Co-authored-by: Alex Assuied <123543888+aassuied-ps@users.noreply.github.com>
Co-authored-by: Emily de la Rua <emily.de_la_rua@contractors.roche.com>
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: 27856297+dependabot-preview[bot]@users.noreply.github.com <27856297+dependabot-preview[bot]@users.noreply.github.com>
Co-authored-by: YoshitoKoujin <123349854+YoshitoKoujin@users.noreply.github.com>
Co-authored-by: Korbinian Matthias <123395522+mattkorb@users.noreply.github.com>
Co-authored-by: Abinaya Yogasekaram <73252787+ayogasekaram@users.noreply.github.com>
Co-authored-by: ayogasekaram <abinaya.yogasekaram@contractors.roche.com>
Co-authored-by: Jessica Knizia <85986258+jknizia@users.noreply.github.com>
Co-authored-by: mattkorb <korbinian.matthias@boehringer-ingelheim.com>
Co-authored-by: edelarua <edelarua@users.noreply.github.com>
Co-authored-by: Emily de la Rua <59304861+edelarua@users.noreply.github.com>
huanlugwu added a commit that referenced this pull request Aug 26, 2024
* update branch 207 (#222)

* 201 new figure figure 14 (#209)

* First draft

First draft (not fully working)

* New push

Now the results are correct. Colors in the table are missing and the order of the group is not correct.

* Delete width= in geom_errorbar

To avoid warning `position_dodge()` requires non-overlapping x intervals

* Update

Put example in comments @examples

* Update fda-fig_14 and argument convention

* tests

Update setup.R to add ggplot2

* quarto page

* _quarto.yml and NEWS.md

* typo

* Put PARAMCD in code mode

* Remove id_var, add visit_var, reverse order of table rows

* [skip actions] Restyle files

* Add to index

* [skip actions] Restyle files

* Empty commit

* Fix unrelated broken template

* [skip actions] Roxygen Man Pages Auto Update

* Empty commit

* Fix lint

* Fix imports/exports

* Update template

---------

Co-authored-by: Emily de la Rua <emily.de_la_rua@contractors.roche.com>
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: 27856297+dependabot-preview[bot]@users.noreply.github.com <27856297+dependabot-preview[bot]@users.noreply.github.com>

* 196-new-table-38 (#204)

* 1st commitment for all documents

* [skip actions] Restyle files

* [skip actions] Roxygen Man Pages Auto Update

* Fix table 35 title

* Update index

* Update label indentation

---------

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: 27856297+dependabot-preview[bot]@users.noreply.github.com <27856297+dependabot-preview[bot]@users.noreply.github.com>
Co-authored-by: Emily de la Rua <emily.de_la_rua@contractors.roche.com>

* 195 new table table 36 (#208)

* Add make_table_36

* Add tests for make_table_36

* Addd quarto page for make_table_36

* [skip actions] Restyle files

* Update NEWS file

* Remove scda from table 22

* Solve lintr marks for table 22

* empty commit

* Update WORDLIST

---------

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: Abinaya Yogasekaram <73252787+ayogasekaram@users.noreply.github.com>
Co-authored-by: ayogasekaram <abinaya.yogasekaram@contractors.roche.com>
Co-authored-by: Emily de la Rua <emily.de_la_rua@contractors.roche.com>

* 105 table 09 tplyr (#192)

* Prepare first raw tplyr table including risk difference columns

* Table 9 Tplyr: Update header string in case risk difference columns are expected

* Table 9 Tplyr: Add parameter for overall column

* Tab 9 Tplyr: Introduce soc_var parameter

* Add show_colcounts and prune functionality

* Clean comments

* Replace remaining hard-coded variable names by parameters

* Add option to return a gt_table object

* Add checkmate checks

* Allow for both, character and factor, since tplyr seems to prefer character

* Update roxygen documentation

* Add make_table_09_tplyr() to web page

* Establish first test cases

* Add test for correct column header assignment (make_table_09_tplyr)

* Add column ordering based on arm order for make_table_09_tplyr

* Add final tests and clean

* [skip actions] Restyle files

* Solve lintr markers

* Update after devtools::check()

* [skip actions] Restyle files

* [skip actions] Roxygen Man Pages Auto Update

* Restart github check by code modification

* Update example data frpm scda to random.cdisc.data

* [skip actions] Restyle files

* [skip actions] Roxygen Man Pages Auto Update

* Set RoxygenNote to 7.3.0 as required by GitHub action

* Fix make_table_09_tplyr() row order

* Add scda to 'Suggests' since table 22 still includes it in the example and tests

* Move scda from Suggests to Imports since table 22 quarto page relies on it as well...

* Replace scda w/ random.cdisc.data for table 22 examples and tests

* [skip actions] Roxygen Man Pages Auto Update

* Restrict Tplyr version to <= 1.1.0 until newly introduced incompatibilities w/ higher versions are solved

* Restrict to Tplyr version 1.1.0

* Remove version restriction for Tplyr

* Deactivate risk difference feature until {Tplyr} issue is solved

* Re-document

* [skip style] [skip vbump] Restyle files

---------

Co-authored-by: mattkorb <korbinian.matthias@boehringer-ingelheim.com>
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: 27856297+dependabot-preview[bot]@users.noreply.github.com <27856297+dependabot-preview[bot]@users.noreply.github.com>
Co-authored-by: ayogasekaram <abinaya.yogasekaram@contractors.roche.com>

* Update boehringer company logo on website (#214)

* [skip actions] Bump version to 0.1.0.9054

* 211 new table table 33 with gtsummary (#212)

Closes #211

* [skip actions] Bump version to 0.1.0.9055

* 205_BUG_fix _make_table_34 Issue (#215)

* Calculate counts for FMQ levels.
Updated test file and Qualt file accordingly.

* [skip style] [skip vbump] Restyle files

* [skip roxygen] [skip vbump] Roxygen Man Pages Auto Update

* lint R check

* [skip style] [skip vbump] Restyle files

---------

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: 27856297+dependabot-preview[bot]@users.noreply.github.com <27856297+dependabot-preview[bot]@users.noreply.github.com>

---------

Co-authored-by: Alex Assuied <123543888+aassuied-ps@users.noreply.github.com>
Co-authored-by: Emily de la Rua <emily.de_la_rua@contractors.roche.com>
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: 27856297+dependabot-preview[bot]@users.noreply.github.com <27856297+dependabot-preview[bot]@users.noreply.github.com>
Co-authored-by: YoshitoKoujin <123349854+YoshitoKoujin@users.noreply.github.com>
Co-authored-by: Korbinian Matthias <123395522+mattkorb@users.noreply.github.com>
Co-authored-by: Abinaya Yogasekaram <73252787+ayogasekaram@users.noreply.github.com>
Co-authored-by: ayogasekaram <abinaya.yogasekaram@contractors.roche.com>
Co-authored-by: Jessica Knizia <85986258+jknizia@users.noreply.github.com>
Co-authored-by: mattkorb <korbinian.matthias@boehringer-ingelheim.com>
Co-authored-by: edelarua <edelarua@users.noreply.github.com>

* with fda-fig_03 added

* [skip style] [skip vbump] Restyle files

* switch from {survminer} to {ggsurvfit}

* [skip style] [skip vbump] Restyle files

* Clean up aesthetics

* Import ggsurvfit

* Update tests

* Refresh template table

* Fix lint

* Fix spelling

* Load data in template

* Use DCSREAS instead of DCTREAS in figure 3 (and table 4)

* Fix R CMD Check note

* Fix remaining documentation

* update cumulative table

* Update test snapshots

---------

Co-authored-by: Alex Assuied <123543888+aassuied-ps@users.noreply.github.com>
Co-authored-by: Emily de la Rua <emily.de_la_rua@contractors.roche.com>
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: 27856297+dependabot-preview[bot]@users.noreply.github.com <27856297+dependabot-preview[bot]@users.noreply.github.com>
Co-authored-by: YoshitoKoujin <123349854+YoshitoKoujin@users.noreply.github.com>
Co-authored-by: Korbinian Matthias <123395522+mattkorb@users.noreply.github.com>
Co-authored-by: Abinaya Yogasekaram <73252787+ayogasekaram@users.noreply.github.com>
Co-authored-by: ayogasekaram <abinaya.yogasekaram@contractors.roche.com>
Co-authored-by: Jessica Knizia <85986258+jknizia@users.noreply.github.com>
Co-authored-by: mattkorb <korbinian.matthias@boehringer-ingelheim.com>
Co-authored-by: edelarua <edelarua@users.noreply.github.com>
Co-authored-by: Emily de la Rua <59304861+edelarua@users.noreply.github.com>
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[New Table]: Table 33 with gtsummary
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