244 new ard table 35 add gtsummary and ard #536
5 errors, 131 pass in 1m 15s
Annotations
Check failure on line 0 in fda_table_35
github-actions / Unit Tests Summary
1 out of 3 runs with error: Table_35_generation_works_with_custom_values (fda_table_35)
cardinal.Rcheck/tests/testthat/junit-result.xml [took 0s]
Raw output
Error in `make_table_35_rtables(adae, adsl, lbl_overall = "Total\nPopulation", ('test-fda-table_35.R:45:3')
Error in `make_table_35_rtables(adae, adsl, lbl_overall = "Total\nPopulation",
annotations = list(title = paste("Table 35. Patients With Adverse Events1 by System Organ Class,\n",
"Safety Population, Pooled Analysis"), main_footer = c("Source: [include Applicant source, datasets and/or software tools used].",
"(1) Treatment-emergent adverse event defined as [definition].",
"(2) Duration = [e.g., X week double-blind treatment period or median",
"and a range indicating pooled trial durations].", "(3) Difference is shown between [treatment arms] (e.g., difference",
"is shown between Drug Name dosage X vs. placebo).",
"(4) Table display is ordered by the risk difference."),
prov_footer = c("Abbreviations: CI, confidence interval;",
"N, number of patients in treatment arm;", "n, number of patients with at least one event")))`: object 'adae' not found
Backtrace:
x
1. \-cardinal::make_table_35_rtables(...) at test-fda-table_35.R:45:3
2. +-rtables::append_topleft(...)
3. | +-base::stopifnot(...)
4. | \-methods::is(newlines, "character")
5. \-formatters::var_labels(adae, fill = TRUE)
6. +-base::stopifnot(is.data.frame(x))
7. \-base::is.data.frame(x)
Check failure on line 0 in fda_table_35
github-actions / Unit Tests Summary
1 out of 3 runs with error: Table_35_generation_works_with_risk_difference_column (fda_table_35)
cardinal.Rcheck/tests/testthat/junit-result.xml [took 0s]
Raw output
Error in `make_table_35_rtables(adae, adsl, risk_diff = risk_diff)`: object 'adae' not found ('test-fda-table_35.R:77:3')
Error in `make_table_35_rtables(adae, adsl, risk_diff = risk_diff)`: object 'adae' not found
Backtrace:
x
1. \-cardinal::make_table_35_rtables(adae, adsl, risk_diff = risk_diff) at test-fda-table_35.R:77:3
2. +-rtables::append_topleft(...)
3. | +-base::stopifnot(...)
4. | \-methods::is(newlines, "character")
5. \-formatters::var_labels(adae, fill = TRUE)
6. +-base::stopifnot(is.data.frame(x))
7. \-base::is.data.frame(x)
Check failure on line 0 in fda_table_35
github-actions / Unit Tests Summary
1 out of 3 runs with error: Table_35_generation_works_with_some_NA_values (fda_table_35)
cardinal.Rcheck/tests/testthat/junit-result.xml [took 0s]
Raw output
Error in `make_table_35_rtables(adae, adsl)`: object 'adae' not found ('test-fda-table_35.R:88:3')
Error in `make_table_35_rtables(adae, adsl)`: object 'adae' not found
Backtrace:
x
1. \-cardinal::make_table_35_rtables(adae, adsl) at test-fda-table_35.R:88:3
2. +-rtables::append_topleft(...)
3. | +-base::stopifnot(...)
4. | \-methods::is(newlines, "character")
5. \-formatters::var_labels(adae, fill = TRUE)
6. +-base::stopifnot(is.data.frame(x))
7. \-base::is.data.frame(x)
Check failure on line 0 in fda_table_35
github-actions / Unit Tests Summary
1 out of 3 runs with error: Table_35_generation_works_with_custom_values_SOC_variable_and_label_ (fda_table_35)
cardinal.Rcheck/tests/testthat/junit-result.xml [took 0s]
Raw output
Error in `make_table_35_rtables(adae, adsl, lbl_overall = "Total\nPopulation", ('test-fda-table_35.R:95:3')
Error in `make_table_35_rtables(adae, adsl, lbl_overall = "Total\nPopulation",
soc_var = "AEBODSYS", lbl_soc_var = "AEBODSYS var used")`: object 'adae' not found
Backtrace:
x
1. \-cardinal::make_table_35_rtables(...) at test-fda-table_35.R:95:3
2. +-rtables::sort_at_path(...)
3. | \-base::NROW(tt)
4. \-rtables::build_table(lyt, df = adae, alt_counts_df = alt_counts_df)
5. +-rtables:::set_def_child_ord(lyt, df)
6. \-rtables:::set_def_child_ord(lyt, df)
7. +-rtables:::set_def_child_ord(clayout(lyt), df)
8. \-rtables:::set_def_child_ord(clayout(lyt), df)
9. \-base::lapply(lyt, set_def_child_ord, df = df)
10. +-rtables (local) FUN(X[[i]], ...)
11. \-rtables (local) FUN(X[[i]], ...)
12. \-base::lapply(lyt, set_def_child_ord, df = df)
13. +-rtables (local) FUN(X[[i]], ...)
14. \-rtables (local) FUN(X[[i]], ...)
Check failure on line 0 in fda_table_35
github-actions / Unit Tests Summary
1 out of 3 runs with error: Table_35_generation_works_with_pruning (fda_table_35)
cardinal.Rcheck/tests/testthat/junit-result.xml [took 0s]
Raw output
Error in `make_table_35_rtables(adae, adsl, prune_0 = TRUE)`: object 'adae' not found ('test-fda-table_35.R:109:3')
Error in `make_table_35_rtables(adae, adsl, prune_0 = TRUE)`: object 'adae' not found
Backtrace:
x
1. \-cardinal::make_table_35_rtables(adae, adsl, prune_0 = TRUE) at test-fda-table_35.R:109:3
2. +-rtables::append_topleft(...)
3. | +-base::stopifnot(...)
4. | \-methods::is(newlines, "character")
5. \-formatters::var_labels(adae, fill = TRUE)
6. +-base::stopifnot(is.data.frame(x))
7. \-base::is.data.frame(x)