Bioc 3.18 release version (v1.16.0)

This update mirrors the Bioconductor 3.18 release version (v1.16.0)
News:

• corrections in vignettes
• ROI, uROI and FIR input checks for NA in rtMin, rtMax, mzMin and mzMax
• correct plotAnnotationDiagnosticMultiplot axes limit after change in ggplot2 behaviour following a rotation

Bioc 3.17 release version (v1.14.0)

This update mirrors the Bioconductor 3.17 release version (v1.14.0)
News:

• Correct depreciation warnings for ggplot2 ..density.. to after_stat()
• Correct peakPantheR_plotPeakwidth issue due to ggplot2 behaviour changes for date axis
• Correct plotHistogram changing warning message

Bioc 3.16 fixed version (v1.12.2)

This update mirrors the fixed Bioconductor 3.16 release version (1.12.1)
News:

• Bugfix: manage mxML files without timestamp tag
• Bugfix: plotHistogram changing warning messge
• Bugfix: peakPantheR_plotPeakwidth issue due to change in ggplot2 behaviour for date axis
• Depreciation warning from ggplot2 ..density.. corrected to after_stat()

Bioc 3.15 release version (v1.10.0)

This update mirrors the Bioconductor 3.15 release version (v1.10.0)
News:

• GUI corrections and improvements (use of bslib)
• BiocCheck format update

Bioc 3.14 release version (v1.8.0)

This update mirrors the Bioconductor 3.14 release version (v1.8.0)
New:

• Correct error due to change in behavior for default axis label in ggplot2 histogram
• Fix GGplot2 guide depreciation warning

Bioc 3.13 release version (v1.6.0)

This update mirrors the Bioconductor 3.13 release version (v1.6.0)
New:

• Alignment of peak integration algorithm across functions, integrateFIR() is now resilient to missing scans
• Additional calculation of raw peak area without smoothing (peakArea Raw)
• Optimised mzML parameter parser
• Corrections for R 4.1.0
• Move to Github Actions workflows

Bioc 3.12 release version (v1.4.0)

This update mirrors the Bioconductor 3.12 release version (v1.4.0)
New:

• Retention time correction
• Shiny Graphical user interface

Bioc 3.11 release version (v1.2.0)

This update mirrors the Bioconductor 3.11 release version (v1.2.0)

Bioc 3.10 release version (v1.0.0)

This update mirrors the Bioconductor 3.10 release version (v1.0.0)

v0.99.x new numbering

In this update the code base has been reformatted to follow Bioconductor's guidelines, and as such the version numbering is restarted from 0.99.x
Additionally, this update groups successive improvements such as the detection of duplicated spectraPaths or the procedure to resetFIR.