Replace System.err with SLF4J calls #56
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src/main/java/org/phyloref/jphyloref/commands/WebserverCommand.java
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This PR replaces most of our System.err calls with calls to the SLF4J logging system. This will make it easier to add debugging information in the future, when we can use verbose flags (
-v,-vv) to provide increasingly detailed debugging information (#31).Closes #51.