set separate directory for test count intermediate files

pinellolab · Apr 11, 2024 · 08eb3cb · 08eb3cb
1 parent 88a4180
commit 08eb3cb
Showing 1 changed file with 4 additions and 4 deletions.
diff --git a/tests/test_count.py b/tests/test_count.py
@@ -33,7 +33,7 @@ def test_guide_count():
 
 @pytest.mark.order(104)
 def test_count_samples():
-    cmd = "bean count-samples -i tests/data/sample_list.csv -b A -f tests/data/test_guide_info.csv -o tests/test_res/ -r --guide-start-seq=GGAAAGGACGAAACACCG"
+    cmd = "bean count-samples -i tests/data/sample_list.csv -b A -f tests/data/test_guide_info.csv -o tests/test_res/var/ -r --guide-start-seq=GGAAAGGACGAAACACCG"
     try:
         subprocess.check_output(
             cmd,
@@ -46,7 +46,7 @@ def test_count_samples():
 
 @pytest.mark.order(105)
 def test_count_samples_bcstart():
-    cmd = "bean count-samples -i tests/data/sample_list.csv -b A -f tests/data/test_guide_info.csv -o tests/test_res/ -r --barcode-start-seq=GGAA"
+    cmd = "bean count-samples -i tests/data/sample_list.csv -b A -f tests/data/test_guide_info.csv -o tests/test_res/var2/ -r --barcode-start-seq=GGAA"
     try:
         subprocess.check_output(
             cmd,
@@ -84,7 +84,7 @@ def test_barcode_start_idx():
 
 @pytest.mark.order(106)
 def test_count_samples_tiling():
-    cmd = "bean count-samples -i tests/data/sample_list_tiling.csv -b A -f tests/data/test_guide_info_tiling_chrom.csv -o tests/test_res/ -r"
+    cmd = "bean count-samples -i tests/data/sample_list_tiling.csv -b A -f tests/data/test_guide_info_tiling_chrom.csv -o tests/test_res/tiling/ -r"
     try:
         subprocess.check_output(
             cmd,
@@ -97,7 +97,7 @@ def test_count_samples_tiling():
 
 @pytest.mark.order(107)
 def test_count_chroms():
-    cmd = "bean count --R1 tests/data/test_tiling_R1.fastq --R2 tests/data/test_tiling_R2.fastq -b A -f tests/data/test_guide_info_tiling_chrom.csv -o tests/test_res/ -r"
+    cmd = "bean count --R1 tests/data/test_tiling_R1.fastq --R2 tests/data/test_tiling_R2.fastq -b A -f tests/data/test_guide_info_tiling_chrom.csv -o tests/test_res/tiling_chrom/ -r"
     try:
         subprocess.check_output(
             cmd,