Integrate Slice Sampling: Generalised Elliptical. #900
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Codecov Report
@@ Coverage Diff @@
## master #900 +/- ##
========================================
- Coverage 100% 99.6% -0.4%
========================================
Files 55 56 +1
Lines 5673 5839 +166
========================================
+ Hits 5673 5816 +143
- Misses 0 23 +23
Continue to review full report at Codecov.
|
49 tasks
MichaelClerx
reviewed
Oct 8, 2019
| self._ready_for_tell = True | ||
| return np.array(self._proposed_sample, copy=True) | ||
|
|
||
| def tell(self, reply): |
There was a problem hiding this comment.
reply can just be called fx here
MichaelClerx
reviewed
Oct 8, 2019
| # Unpack reply | ||
| fx = np.asarray(reply, dtype=float) | ||
|
|
||
| # Very first call |
There was a problem hiding this comment.
# Ensure fx is a float
fx = float(fx)
MichaelClerx
reviewed
Oct 8, 2019
|
|
||
| # First run | ||
| x = mcmc.ask() | ||
| fx = log_pdf.evaluateS1(x)[0] |
There was a problem hiding this comment.
fx = log_pdf(x0) --> don't calculate sensitivities!
MichaelClerx
reviewed
Oct 8, 2019
| # Second run | ||
| x = mcmc.ask() | ||
| self.assertTrue(np.all(x == x0)) | ||
| fx = log_pdf.evaluateS1(x)[0] |
There was a problem hiding this comment.
fx = log_pdf(x0) --> don't calculate sensitivities!
etc
MichaelClerx
reviewed
Oct 8, 2019
| Sets mean of the Gaussian distribution from which we | ||
| draw the starting samples. | ||
| """ | ||
| if type(mean) == int or float: |
|
@ben18785 how's it going with all the slice samplers? I thought they were all nearly done but it seems to have slowed down |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
See #772